barSeed - Barley Seed Development Database

Probe CUST_5273_PI390587928

Source Contig U35_20810

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5273_PI390587928	Hv_44K_v2	GTTGGCATATGCTGAAAGAAACACTTTGAGAAGAAGACAAATTATACTCTGGTTACTAAC	1023	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355797	3188	7e-23	2784 - 2843	98	59 / 60	plus	None
MLOC	AK368073	1535	3e-21	1069 - 1128	97	58 / 60	plus	ABC15629
JLOC1	JLOC1_20909.1	569	4e-23	25 - 84	98	59 / 60	minus
Harvest21	ABC13903	1089	3e-25	1024 - 1083	100	60 / 60	plus
Harvest21	ABC51389	598	6e-22	460 - 519	97	59 / 61	plus
Harvest21	ABC32818	525	6e-22	392 - 451	97	58 / 60	plus
Harvest35	U35_20810	1089	3e-25	1024 - 1083	100	60 / 60	plus
Harvest35	U35_49581	598	6e-22	460 - 519	97	59 / 61	plus
Harvest35	U35_37152	525	6e-22	392 - 451	97	58 / 60	plus

Contig Sequence (1089 bp)

>U35_20810 1089 Hv_44K_v2
GATCCGCCCTAGTTCTTCCCCTCTGCAGCCGCCCCTGTCGCCGTGCCGTCCAGCCCCTCC
TCCGGACCCGCAGCCACCCTACCCTCCCTCCGCAGCCAGGGTGTCCCGGCGTCGCCCTCG
CCCTGACTCCCCTCCGGCCGGCCCCGGCGACCGGACGAGGAAGCCCGGCAGCGCCGCCAG
CGGAGGGTTCATTGTCGTCGCCCCTACCCGGAGCAGAGAGCGAAGAGCGAAGAGAGGAGG
GACCGCTCGCTCGCTCGTCGCCTCATCGTTGGTGGTGGTGGCTCCGCCTTCCCTCTCCCT
CCGCGTCGCCCAGGTGTTAGCTGATAAAATAGAAGGGGAAAGGCGCTACCATGGGCATTT
CATCCAAGTGGATCAAATCACTTGTTGCGATAAAAAAGCATGGAAAAGATCAGACTGGTG
AAAGCAGCAGAGAAGTGCTGGCCAACTACCCGGAGGGCACCACCGCGCTGCGGGAGCTCA
TCCAGAACACCGATGACACAGGGGCCTCGCGGGTCCTCCTCTGCCTTGACCGCCGCGCCC
ACGGCTCCTACTCGCTGCTCGGCCCGGCGCTCGCGCAATGGCAGGGCCCCGCCCTGCTCG
CCCACAATGACGCCGCCTTCACCGACAACGACTTCGCCAGCATCTCCCGCATCGGCGGCA
GCAAGAAGGCCTCCTAGGCATGGAAGACCGGCCGCTTCGGAACTGCATCGAAGATATGTT
GCTCTGAACATACTTATGACGGCATTATAGTAGATACACAAGCAGTACAGAGGCACAGGG
TGTCAATATTGGAGTGTGTAAAGGATGCCGATGCCCCCATTCGCAAAAGGGCCCTAGAAC
TTGTTTATTTGTTGGTCAATGATACTAATGTAAAGCTACTGACCAAAAAGCTTGTCGACT
ACTTGAAAGTAGCTAATCCAGACTTCAAAGAAGATCTCAGAGCCAAGATATGCTCTATGG
CTGAAAAGTTTTCTCAAGAAAAGTTATGGTATCTTGATCAGATGTTCAAGGTTTTATCCC
TGAGTTGGCATATGCTGAAAGAAACACTTTGAGAAGAAGACAAATTATACTCTGGTTACT
AACACTGAC

Homology of Contig U35_20810 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None