barSeed - Barley Seed Development Database

Probe CUST_5241_PI390587928

Source Contig U35_13718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5241_PI390587928	Hv_44K_v2	GTCGAGCATCTCCATGTATAAATAAATAAAGGAGCAGTTTTATTCGTTGTAACAGACAGT	1126	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251322.1	1232	3e-21	1134 - 1193	97	58 / 60	plus	ABC02893 ABC02894
JLOC1	JLOC1_4446.1	1476	8e-25	1257 - 1316	100	60 / 60	plus
Harvest21	ABC02892	997	3e-25	45 - 104	100	60 / 60	minus
Harvest21	ABC02894	370	6e-22	254 - 313	97	58 / 60	plus	ABC02894
Harvest21	ABC02891	1235	8e-21	1127 - 1184	97	56 / 58	plus
Harvest35	U35_13718	1233	3e-25	1127 - 1186	100	60 / 60	plus
Harvest35	U35_13880	460	6e-22	347 - 406	97	58 / 60	plus

Contig Sequence (1233 bp)

>U35_13718 1233 Hv_44K_v2
GGCTTGCCAAGCAACGTTTCGCCATGGGTTCCAGCAAGCCACTCCGGCTGATCCAGCACA
AAAAGGAGGCCCTCTGGTTCTACAGCTTCATCTCCTTCGGCTACGACCATGTCTTCAACC
CCGGCCAGTACACTGAGGACATGCGCGACATCTCCCTGGAGCATGCCCGCCTCCATAGCC
GGGCCCTCAAGGTGGTCGATGTCGGCGGTGGCACTGGGTTCACCACGCTCGGCGTCGTCC
GGCACGTCGATCCCGAGAACGTGACGCTGATCGACCAGTCGCCGCACCAACTCGACAAGG
CCAGAAAGAAGAAGGCCCTAAGGGGCATCAAGATCATGAAGGGTGACGCCGAGGACCTTC
CCTTCCCCACCGACACCTTCGACCGATACGTCTCCGCTGGCAGCATTGAGTATTGGCCTG
ATCCACAACGGGGGATCAGGGAGGCCTACAGGGTCCTGACCGCCGACGGCGTGGCTTGTA
TGATAGGCCCCGTCCGTCCGACATTTTGGCTATCTCGCTTCTTCGCTGACATGTGGATGC
TCTTCCCCACGGAGGAAGAGTACATGAAATGGTTCGAGAGGGCAGGGTTTAAGGACGTCG
AGCTCACTAGGATCGGGCCCAAGTGGTACCGTGGTGCCCGTAGGCATGGCCTGGTCATAG
GGTGTTGTGTCACGGGCATCAAGACACAAAGTGGAGACTCCCCCTTGCAGCTTGGTCCGA
AGGTTGAGGATGTGAGCAAGCCACATGTGAACCCCGTCTTCGTCTTCTTTCGGTTCCTCA
TTGGAACAATATGCGCCACATACTTCTTCCTAGTGCCTATTTACATGTGGATCAAGGACA
AGATTGTGCCCCAAGGCAGGCCCATCTAACTAATGATGCTCCCTGACGGGAGGAGACAAG
ATTGGAGTCAATATCCGATCTAAGCCATGCAAACACCCCTTTTGTTCCATGTTGTGTTGT
GTATCTATATATATGTGGACGCGCGCGACTGTCAGAAGACCGATCTGCTATTGGCTCCGT
TTATCAACGGATACAGAGGCAGGTGCTCCAGGACATGGGAAACTGATTGATCAGACTTAC
TTCCTGCTTATATATCTCTCTTCGAGTTGTCTGGATCCCTGAAAAGGTCGAGCATCTCCA
TGTATAAATAAATAAAGGAGCAGTTTTATTCGTTGTAACAGACAGTGAGTATATAAATAG
AGAATTTCAATCAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42090.2	349	3e-148	protein\|methyltransferase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g04930.1	278	6e-165
Arabidopsis v10	AT3G63410.1	338	5e-129	\| Symbols: APG1, VTE3, IEP37, E37 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:23415816-23417002 REVERSE LENGTH=338