barSeed - Barley Seed Development Database

Probe CUST_5204_PI390587928

Source Contig U35_13740

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5204_PI390587928	Hv_44K_v2	TTCGGTCGTGTGCAATGCCAGTTTGTCACCGATAGATTGTACAACTTTAATGGGACGAAC	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79167.1	965	2e-24	216 - 275	100	60 / 60	plus	ABC01865 ABC01867
JLOC1	JLOC1_52751.1	997	8e-25	212 - 271	100	60 / 60	plus
Harvest21	ABC01872	736	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_13740	556	3e-25	463 - 522	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_13740 556 Hv_44K_v2
GCTTCTTCTTCCTCCTCCTTTCGGGTGGCCGCCACCTTGGCCGCGCTGCTGGCGGCCGTC
TGCGTCCTCCACTTCCACGACTGCTTCGTGCAGGGGTGCGACGCGTCGCTGCTGCTGGAC
ACCTTCAACGGGATGGAGACGGAGAAGGACGCCATTCCCAACAAGAACTCGGCGCGCCGC
TACGACGTCATCGACACCGCCAAGGCCGCCCTCGAGGCCGCCTGCCCTGGCGTCGTCTCC
TGCGCCGACATCCTCGCCATAGCCGCCGAGATCTCGGTCCAGCTGTCTGGAGGACCTGGG
TGGAGCGTCTTGCTGGGGAGGCTGGACGGCTTCACGTCCAACTTTACGGAAGCCGGGAAC
CTACCAGGCCCATTCGACGGCCTGAAAAACCTGACAGACAAGTTCAAACTCGCCACGCTT
GACGGTACTACCGACCTCGTCGCTCTCTCAGGCGCACACACTTTCGGTCGTGTGCAATGC
CAGTTTGTCACCGATAGATTGTACAACTTTAATGGGACGAACCGGCCCGACCCGACCCTC
AGCCCGAGCTATAGGG

Homology of Contig U35_13740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g02040.1	337	2e-73	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g27920.1	342	2e-84
Arabidopsis v10	AT2G38380.1	349	2e-64	Peroxidase superfamily protein \| chr2:16076443-16078314 FORWARD LENGTH=349