barSeed - Barley Seed Development Database

Probe CUST_5201_PI390587928

Source Contig U35_13743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5201_PI390587928	Hv_44K_v2	CCGTGGCAATCAGAGTTTTCTCTTAACACAATTGTTTCATATTTCTTTGTATTGCTACAG	983	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370647	2183	2e-24	1971 - 2030	100	60 / 60	plus	ABC00262 ABC00398 ABC00501 ABC00927
MLOC	MLOC_50994.2	825	2e-24	104 - 163	100	60 / 60	minus	ABC00262 ABC00398
MLOC	MLOC_50994.1	1639	2e-24	365 - 424	100	60 / 60	minus	ABC00262 ABC00398
JLOC1	JLOC1_32541.1	1342	8e-25	121 - 180	100	60 / 60	minus
JLOC1	JLOC1_32542.1	1036	8e-25	651 - 710	100	60 / 60	plus
Harvest21	ABC00445	1202	3e-25	191 - 250	100	60 / 60	minus
Harvest21	ABC00398	1199	3e-25	984 - 1043	100	60 / 60	plus	ABC00398
Harvest35	U35_13743	1233	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_13743 1233 Hv_44K_v2
GCACCAGATAAGAAAAGAAGAAAAAAAGAGAGAGAAGGACTCGTCGGGAGGGCTCGAGAT
CTGTGTCGGGAGAGGGGGGAATTCTTGAGATCGGAATCGGATCAAGCGGGCGCGCTCGGG
AAGGGGTTATTACCATACCAAATTTTCCCAGGAACCCGTGAAAAGGCAACACATCTTTGA
CATCCCCACGACCGGACTTGAGCAGCCGCAGGCCGCAGCAGACAGATCTTCTCGACACCC
ACCGACGGCTAAGCGGATATGGCGGCTTCACCGGCAACGTCGTCCGCGGCCGCGGGGGCC
TCCTCCTCCGCGTGGCTATCCAGCGCGCCTCTGCGTTCGCCCAGAGTCGCCGCTGCCTCG
TTCCCGTCGCCCAACTCCGTTCGTCCGGCCGCGCTGGTCGTGGATGCTCGGGCCTCTCGG
CTCTCCGTCGTGACCGCAGCCGCCGCAGGGCACCAGCGGCTGATGGGGTCGCTGACCAAC
AACGAGGGGCTCAGGTTCGGCGTGGTTGTGGCACGGTTCAATGAGATAGTGACCAACTTG
CTTCTGCAGGGGGCTCTAGAGGCATTCGAGCGATACTCCGTCAAAGCAGAAAATATCACC
GTTGTTAGTGTTCCTGGCAGCTTTGAAATTCCTGTTGCAGCACAGAAGCTTGGGAAGTCT
GGAAAGTATGATGCAATTTTGTGCATTGGGGCTGTGATTAGAGGTGACACAACTCACTAT
GATGCTGTTGCAAACTCTGCTGCTTCAGGTGTACTCAATGCTGGATTGTCTGCTGGTATC
CCCTGCGTGTTTGGTGTTTTGACCTGTGATGACATGGACCAGGCGCTAAACCGTGCTGGT
GGCAAGGCAGGAAACAAGGGCGCCGAGACCGCTATAACAGCTATTGAGATGGCCTCGCTG
TTTCGGCATCACCTAGCCTGATGGTACCGAATGCTGTTGTCGTCGAGCCAGCGAGATTTT
CTCCCCTGTCCGTGGCAATCAGTCCGTGGCAATCAGAGTTTTCTCTTAACACAATTGTTT
CATATTTCTTTGTATTGCTACAGGCTAGTGTTTGATCTGTCGTTTCAATGTTATTTTGGT
CTGTATGTATGTACTCCGATTGCCGGTCCACCTTTGCCCGCAAGAAACTTGCAAGTCTAG
AGCAGGAATAAACCTTTTCTTTAACACAGAATAAATCTTTTTCTAGATGCATGAATAAAC
CTTTTCACCGTGCCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42000.1	222	3e-93	protein\|6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g10780.1	221	7e-105
Arabidopsis v10	AT2G44050.1	227	1e-66	\| Symbols: COS1 \| 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase \| chr2:18224304-18225917 FORWARD LENGTH=227