barSeed - Barley Seed Development Database

Probe CUST_518_PI390587928

Source Contig U35_32083

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_518_PI390587928	Hv_44K_v2	TGATGAAGCAGGTCATACAGAGGCAAGAGGAGATGCAGCAGCGGTTTCTGGAGACCATGG	289	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358911	3130	2e-24	1696 - 1755	100	60 / 60	plus	ABC08519 ABC14030
MLOC	MLOC_22988.3	1490	7e-23	617 - 676	98	59 / 60	plus	ABC08519 ABC14030
MLOC	MLOC_22988.2	1648	7e-23	751 - 810	98	59 / 60	plus	ABC08519 ABC14030
MLOC	MLOC_22988.1	1672	7e-23	775 - 834	98	59 / 60	plus	ABC08519 ABC14030
JLOC1	JLOC1_15900.2	1570	4e-23	675 - 734	98	59 / 60	plus
JLOC1	JLOC1_15900.1	1663	4e-23	768 - 827	98	59 / 60	plus
Harvest35	U35_32083	455	3e-25	290 - 349	100	60 / 60	plus

Contig Sequence (455 bp)

>U35_32083 455 Hv_44K_v2
ATGCACGCCTTCTCGGCGCCCCAGCCGATGAGCGCAATGCCGCCGCCGCCGGGGCCGATC
CAACCGGCCCCAATTTCTTCCGCGGCCCCTGCGCCGGCCGTGGAGCCTCCCCAGCCGCCG
CCCGTCAGCCTGCAAGGCTTGAGCTTCCCGTCCATGTCCGACTCTGAGTCGGATGACGAC
GACGACTCTGAGGATGACGACATGACGGCGGAGACCGGCGGCAGCCCGGATGGTGTCGGC
AAGCGCAAGCGCGGCGGCAGCAAGAAGATGATGGCTTTCTTCGAGGGCCTGATGAAGCAG
GTCATACAGAGGCAAGAGGAGATGCAGCAGCGGTTTCTGGAGACCATGGAGAAGAGGGAG
GCCGAGCGCACGGCAAGGGAGGAGGCCTGGCGCCGGCAGGAGGTGGCCCGGCTCAACCGC
GAGCAGGAGCAGCTCGCGCAAGAGCGCGCCGCCGC

Homology of Contig U35_32083 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None