barSeed - Barley Seed Development Database

Probe ABC14030

Source Contig ABC14030

barSeed

Links

Affymetrix Source Sequence (1377 bp)

>ABC14030 1377
GGGAGAGCGGAGGGGGCGCGTCGTCGTCACGGTGGCCCAAGACGGAGGTGCACGCGCTTA
TCCAGCTGCGCATGGACATGGACAATCGCTACCAGGAGAACGGACCCAAGGGCCCGCTGT
GGGAGGAGATCTCCGCCGGGATGCGGCGGCTGGGCTACAGCCGCAACTCCAAACGATGCA
AGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAGGC
GGCCGGAGGACTCCAAGACATGCCCGTACTTCCACCAGCTCGAGGCCATCTACCGCAAGA
AACACAACGGCGGCGGCGGCAGCGGCGCGGCCGCCAACAACGCCGCCGTATCTGTCTCAG
TCCCTGCCGTCGCGGAGCATCAGAACCTGAACCGGCACGAGATCGAGATCGAGATCGAGG
GGAAGAAGATCAACGACAACGACAAGAGGAACAACGGAGGAGTCGGAGCCGCGCAGGTGC
CGACAAGCAACGGGCAGACAACGCCGACGACGGCCACGTTCGACGTCGATCTGGGCGTAA
AAAAGCCAGAAGACACTGTGAGGGAGCTGAACGAGCAGCCGCAACGGGAGTTGACGACGG
ACGAGACCGACAGCGACGACATGGGCGATGACTACACTGACGACGGCGAGGACGGCGAGG
ACGACGGCAAAATGCAGTACAGGATACAGTTCCAGAGGCCAAACCCGGTCGGCGCCAACA
ATGCACCTCCACCGGCAACCACCGCGACGACAGCAGCGCCGACATCGACTCCGTCGAGCT
CCTTCCTCGCCATGGTTCAATAAAGGCTCAGCACCATTGCTCATCCATCAGTATACTTCC
AGTTCCAGAGAAGCTATAACCTCGAAACATCACCATCACCGAGTCACCGCTCGAACATGC
ATCACCTCCTCGAGTCGATCATCGCCATCACATCACACCATCACCGACGACGGCGACTGT
TCTTTTTCACCTTGTAATTCCTCTCGTGCCATTCCATTATTTATTGATTCGTTCTGTGTA
ATAAGAGAGCCTCTCTTCTGTCCCCCAAACCGGCCAAGGAGGCAGAGGGGGTGGCCGGTA
GAGCAAGCAAGTCCCTGCGTAACATAGGTGTTCATCCTCGTGTTAAGGCCAAAGAATTGT
ACATCGATGTAAGAGTCCCCTGATGTCTGTTTTTTTCTCTTCTTCTTTTTTCGGCGGTAT
ACAGGTTTGTATACGGGTATACAAGAGTTACATACATTTCAAGCAACTTGGATCAGAGGT
CCAAAGATTGTTTTAGCTGGTGTCGCCCCCTTGTTTAGCGGTGATTAGTATAAGTGTTTT
TTCTTGATAAATTTCGAAATAAGTGACTTTATATTTTACTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_50755.2	965	0.0	1 - 965	99	964 / 965	None	ABC14030
MLOC_50755.1	961	0.0	1 - 961	99	960 / 965	None	ABC14030
AK358911	3130	0.0	2260 - 3128	100	869 / 869	CUST_518_PI390587928	ABC08519 ABC14030
MLOC_22988.2	1648	6e-172	1315 - 1645	99	330 / 331	CUST_518_PI390587928	ABC08519 ABC14030
MLOC_22988.1	1672	6e-172	1339 - 1669	99	330 / 331	CUST_518_PI390587928	ABC08519 ABC14030
MLOC_22988.3	1490	6e-162	1181 - 1490	100	310 / 310	CUST_518_PI390587928	ABC08519 ABC14030
MLOC_14207.2	2883	4e-84	1763 - 2037	87	240 / 275	None	ABC08519 ABC14030
MLOC_14207.3	2631	4e-84	1555 - 1829	87	240 / 275	None	ABC08519 ABC14030
MLOC_14207.1	2796	4e-84	1677 - 1951	87	240 / 275	None	ABC08519 ABC14030
AK372713	2859	2e-82	1785 - 2059	87	239 / 275	None	ABC08519 ABC14030
AK354426	3075	2e-82	1570 - 1844	87	239 / 275	None	ABC08519 ABC14030
AK357823	3192	9e-81	1722 - 2008	86	247 / 288	CUST_11034_PI390587928	ABC08519 ABC14030 ABC15046
AK375494	2598	1e-79	1516 - 1791	86	238 / 276	None	ABC08519 ABC14030
AK376129	2425	1e-79	1347 - 1622	86	238 / 276	None	ABC08519 ABC14030
MLOC_74813.1	1967	1e-79	869 - 1144	86	238 / 276	None	ABC08519 ABC14030
MLOC_74813.3	1147	1e-79	833 - 1108	86	238 / 276	None	ABC08519 ABC14030
MLOC_74813.4	2136	1e-79	818 - 1093	86	238 / 276	None	ABC08519 ABC14030
MLOC_74813.2	1970	1e-79	872 - 1147	86	238 / 276	None	ABC08519 ABC14030
MLOC_70549.3	1259	4e-79	318 - 604	85	246 / 288	CUST_11034_PI390587928	ABC08519 ABC14030 ABC15046
MLOC_70549.2	2579	4e-79	1721 - 2007	85	246 / 288	CUST_11034_PI390587928	ABC08519 ABC14030 ABC15046
MLOC_70549.1	2881	4e-79	2023 - 2309	85	246 / 288	CUST_11034_PI390587928	ABC08519 ABC14030 ABC15046