barSeed - Barley Seed Development Database

Probe CUST_5178_PI390587928

Source Contig U35_13752

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5178_PI390587928	Hv_44K_v2	TTTGGTTGCAGCATCTAGCCACCTACTATGGCGTTGTATACCTGATTTCTCTGGTACTCA	1412	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.814	1.138	1.639	1.779	0.621	0.364
Raw	66.959	151.419	179.099	307.921	38.893	23.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36760.2	3220	7e-23	1793 - 1853	98	60 / 61	plus	ABC02893 ABC02895 ABC49716
JLOC1	JLOC1_23714.1	1762	4e-23	1121 - 1181	98	60 / 61	plus
Harvest21	ABC02893	1489	3e-25	1413 - 1472	100	60 / 60	plus	ABC02893
Harvest35	U35_13752	1489	3e-25	1413 - 1472	100	60 / 60	plus

Contig Sequence (1489 bp)

>U35_13752 1489 Hv_44K_v2
CATCATCCGCTGCCCTCTCTTCCCCTCCACTCCTCCTCGCCGCCGCCTCCGGCTAAGGCA
ATGGCGATGGCCTCCGCGCACGCGCCGAGCGGCGCCGGGAGCCTGGCGATTCGGCCGCGC
GGGCCGGCCGGGCTGGGCTACCTCGGCCTAGGCCCCTCCAGGCCGGCCCTCCGCCCCGTC
GCCCTCGCGAGGCGCGCCGCGCCGTCCCCGCTGCTGCGGTGCGCCGCGGCGGCCTCCTCG
CCCCCGGCCGCGGGCGGGGCGCGGCCCGCGTCGGCGCCGCGCTTCATCCAGCACAAGAAG
GAGGCCTTCTGGTTCTACCGCTTCCTCTCCATCGTCTACGACCACGTCATCAACCCGGGC
CACTGGACCGAGGACATGCGCGACGACGCGCTCGAGCCCGCCGACCTCTACAGCCCCAAG
CTCAAGGTCGTCGACGTCGGCGGCGGCACGGGATTCACCACGCTCGGCATCGTCAGGCAC
GTCGACCCCGCCAACGTCACCCTGCTCGACCAGTCCCCCCACCAGCTCGACAAGGCCAGG
CAGAAGGAGGCCCTCAAGGGGGTCCACATCATGGAGGGCGACGCCGAGGACCTCCCCTTC
CCCACCGACACCTTCGACCGATACGTCTCCGCCGGCAGCATCGAGTACTGGCCTGACCCG
CAGCGAGGAATCAAGGAGGCCTACAGGGTCCTGAGGCTCGGCGGGAAAGCTTGCTTGATC
GGCCCTGTGCACCCAACATTTTGGCTGTCTCGCTTTTTCGCCGATATGTGGATGCTGTTC
CCCACTGAAGAGGAGTATATCGATTGGTTCACAAAGGCAGGGTTCAAGGATGTTCAGCTC
AAGAGGATTGGACCAAAGTGGTACCGTGGTGTCCGTAGGCATGGCCTCATCATGGGGTGC
TCCGTGACTGGTGTCAAGAAAGAAAGTGGGGACTCCCCTTTACAGCTTGGTCCGAAGGCT
GAAGATGTTAGCAAGCCTGTGAATCCTATCACTTTTTTCTTCCGCTTCCTCATGGGAACG
ATATGTGCTGCGTACTATGTTCTGGTGCCTATTTACATGTGGATAAAGGACCAGATTGTG
CCCAAAGGCATGCCGATCTAAGGGAGGAGAATTGAGCTGCAACGAAGAGAGGATAGCCAA
TATCTGAATTAGGCTTCTCTATATTAGGCACTTCACATCTGTTTTTGTTCACCTTTTATA
TTTCCTGTCGTCGTGTATTTATTTTACTTTGGGTCTTGTTATGTGGAGAAATAATATTGG
AGACTTGGATTAAACGCGTCAGAGCTCTTTGGTGTGAAATGGCTCATTTGTAGCAGGTCA
TTGTTTCGGAAATAGAATGTATCTGTAATATTTCTGCACTCTATGCTGACTTGCTAAGTG
GTAGGAAAAATGATACATGAGCTGCATTCCTGTTTGGTTGCAGCATCTAGCCACCTACTA
TGGCGTTGTATACCTGATTTCTCTGGTACTCAGGTGTATAGGGACGCGG

Homology of Contig U35_13752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42090.2	349	0.0	protein\|methyltransferase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g01640.1	351	0.0
Arabidopsis v10	AT3G63410.1	338	7e-157	\| Symbols: APG1, VTE3, IEP37, E37 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:23415816-23417002 REVERSE LENGTH=338