barSeed - Barley Seed Development Database

Probe CUST_5171_PI390587928

Source Contig U35_13759

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5171_PI390587928	Hv_44K_v2	CTTTCTAATGCGTTTGATCTACTTTTGGTAGGTTTTCTGGTACTGATTTTTGTTGCGGTA	1028	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19096.1	792	2e-24	649 - 708	100	60 / 60	minus	ABC01037 ABC01082
Harvest21	ABC01037	541	3e-25	293 - 352	100	60 / 60	minus	ABC01037
Harvest35	U35_13759	1380	3e-25	1029 - 1088	100	60 / 60	plus

Contig Sequence (1380 bp)

>U35_13759 1380 Hv_44K_v2
GACGAACGGAACCAACCAACAAATCCCCAAGCCAATCTCGTCTCCGATCGGCTCCGGCTC
CAGCTCTCCTCCTCTGTTCCTCCCCCGCCGCCCCAAGATGCAGATCTTTGTGAAGACGTT
GACAGGCAAGACCATCACCCTTGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGGC
CAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTCGCTGGCAA
GCAGCTTGAGGACGGCAGCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCA
CCTTGTCCTCCGTCTTCGTGGTGGCATGCAAATCTTTGTCAAGACCCTCACCGGCAAGAC
CATCACCTTGGAGGTGGAGTCATCTGACACCATTGACAACGTGAAGGCGAAGATCCAGGA
CAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGA
TGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCG
TCTTCGTGGTGGCATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCTTGGA
GGTGGAGTCATCTGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCAT
TCCCCCGGACCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCT
GGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGG
CCAGTAAGTGCCTGGCAATGGAGCTGCTTCTCTCCTGGTTCACAGTTCTTGTGTCTTCCT
GTTGTCCAACAGGGGTGTCTGTCTCGTCCTGGTCGTTTCTATGTTTCCACCGTACTGTGA
TGCATCGGCTGTATCTGAAAACTTCTGCCTTTGTGAAGCAGCTTCTGTGAACTATGATAA
ATAAGTGAGCCCTGAATTGTGTGCAAAAAAAAAAAAAAAAAATTATCCTGTGTTTTTCTT
GTTTGCTTCTTTCTAATGCGTTTGATCTACTTTTGGTAGGTTTTCTGGTACTGATTTTTG
TTGCGGTACAACACAGCTTGTGGCACCTTTTCTCACATTATTCATGTGAATATTGTACCT
TTGGCTGTTATGTCTGCATCATCTGGTGTAACTGGTTATTCTTCACCTTGGGATCAAATT
GGCTATTGGGGGCTTTTCAATGTGAGATGGAAGTAATATTAACCATGTCCTTTTGGTCGT
GTGTTTGATTCTACCATGATGTAATCCAGTGCTATGTTAGCAACTTTGATGAACTATCAT
GAACAAGGAATACAAATCCAGTGCTATGTTAGCAACTTTGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	4e-153	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	1e-154
Arabidopsis v10	AT4G05050.1	229	8e-154	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229