barSeed - Barley Seed Development Database

Probe CUST_5146_PI390587928

Source Contig U35_14450

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5146_PI390587928	Hv_44K_v2	TTACTCAGATTAGTGGCGTGTTTTCGTTCATCTGAAATAAAACAGTTTCCGGTCTTCAAA	1634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253004.1	1679	7e-23	1623 - 1679	100	57 / 57	plus	ABC01294 ABC01298 ABC01300
MLOC	MLOC_37167.1	849	7e-23	762 - 818	100	57 / 57	plus	ABC01298
JLOC1	JLOC1_24032.1	1001	4e-23	771 - 827	100	57 / 57	plus
Harvest21	ABC01298	1742	3e-25	1593 - 1652	100	60 / 60	plus	ABC01298
Harvest35	U35_14450	1784	3e-25	1635 - 1694	100	60 / 60	plus

Contig Sequence (1784 bp)

>U35_14450 1784 Hv_44K_v2
TCGAGCACTGTTGGCCTTCTGGAGCTACAAGCGCACACACACATACATATATACACACAG
CCAGAAACGAACGAGCACACACGCGCACGCGAATTCAAGGTTTTGAGATAGCTTAGCTAG
CGTCCATGGCGTCGACGACGACGATCCAGTCGGTGAAGGCGCGGCAGATCTTCGACAGCC
GCGGCAACCCCACCGTCGAGGTGGATATCGGGCTCAGCGACGGGAGCTTCGCCAGGGGCG
CCGTGCCCAGCGGCGCCTCCACCGGAATCTACGAGGCCCTGGAGCTGAGGGATGGAGGCT
CCGATTACCTCGGCAAAGGAGTTCTCAAGGCTGTGAACAACGTAAACGCCATCATCGGAC
CGGCGCTCATCGGAAAGGATCCGACGGAGCAGGCCGACATCGACAACTTCATGGTCCAAG
AACTCGACGGGACCTCCAACGAGTGGGGCTGGTGCAAGCAGAAGCTCGGGGCAAACGCGA
TCCTCGCGGTGTCGCTTGCAGTGTGCAAGGCCGGTGCCATGGTCAACAAGATCCCTCTTT
ACCAGCACATCGCAAACCTTGCTGGGAACAAGACCCTCGTGCTGCCCGTGCCTGCTTTCA
ATGTGATCAACGGAGGTTCTCACGCCGGGAACAAGCTTGCCATGCAGGAGTTCATGATCC
TCCCAACCGGCGCCGCCTCGTTCAAGGAGGCCATGAAGATGGGAGTTGAGGTGTACCACC
ACCTCAAGAGCATAATCAAGAAGAAGTATGGTCAAGACGCCACAAACGTTGGGGATGAAG
GCGGCTTTGCACCTAACATTCAGGAAAACAAGGAGGGCCTTGAACTGCTGAAGGCAGCTA
TAGCCAAGGCTGGCTACACTGGAAAGGTGGTTATTGGAATGGATGTTGCTGCTTCTAAAT
TCTACAGTGAGAAGGATCAGACCTATGACCTTAACTTCAAGGAGGACAACAATGACGGTT
CGCACAAAATCTCGGGCGACAGCCTGAAAGATCTGTACAAGTCCTTCGTCTCCGAGTACC
CTATCGTGTCAATCGAGGACCCGTTCGACCAGGACGACTGGGCCACCTATGCCAAGATGA
CCGGTGAGGTTGGGCAGCAGGTGCAGATTGTCGGAGATGACCTTCTTGTCACTAACCCCA
CGAGGGTTGCCAAGGCGATCGGTGAGAAGACCTGCAATGCCCTTCTTCTCAAGGTGAATC
AGATAGGCTCGGTGACGGAGAGCATCGAAGCCGTCAGTATGTCCAAGCGCGCCGGGTGGG
GAGTGATGGCGAGCCACAGGAGCGGCGAGACGGAGGACACCTTCATTGCCGACCTCTCGG
TCGGCCTGGCCACGGGCCAGATCAAGACTGGAGCTCCCTGCAGGTCCGAGCGTCTGGCCA
AATACAACCAGCTGCTGAGGATCGAAGAGGAGCTCGGCGATGCCGCGGTGTACGCCGGAG
CAAACTTCAGGGCGCCGGTGGAGCCCTACTGAGAAGAAGCCTGCTTGTTGCATGAGCATG
GGTCTGGAGAGAGATGGTCCATGAGTTCTTATGGTGCTGCTAGTTATACTATTATTACTG
CTGTATTTTGATCCAAGCCAGGCAAAATAAGAGTAGTTCTTCCCTACCCGAGAGGCGAGA
GCTAATGGTTGTGATTACTCAGATTAGTGGCGTGTTTTCGTTCATCTGAAATAAAACAGT
TTCCGGTCTTCAAAAAAAAAAAAAAAAATTATTTATTTATATATGCCGGGAGGATAACAG
GACATACCTTATACTCCCTCTGTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04510.1	447	protein\|enolase, putative, expressed
Brachypodium v1_2	Bradi1g51540.1	448
Arabidopsis v10	AT2G36530.1	444	\| Symbols: LOS2, ENO2 \| Enolase \| chr2:15321081-15323786 REVERSE LENGTH=444