barSeed - Barley Seed Development Database

Probe CUST_5145_PI390587928

Source Contig U35_14451

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5145_PI390587928	Hv_44K_v2	ATCTGTAGTGAACTGTTGGGCTGTTGGCATCATCTTATTGGCGTCAGTTTAGTCCTGTTG	1656	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354060	1752	3e-21	1687 - 1746	97	58 / 60	plus	ABC01294 ABC01300 ABC33585 ABC38303 ABC40560
JLOC1	JLOC1_13764.1	859	8e-25	579 - 638	100	60 / 60	plus
Harvest21	ABC01294	1822	3e-25	1679 - 1738	100	60 / 60	plus	ABC01294
Harvest21	ABC38303	544	1e-23	21 - 80	98	59 / 60	minus	ABC38303
Harvest35	U35_14451	1792	3e-25	1657 - 1716	100	60 / 60	plus

Contig Sequence (1792 bp)

>U35_14451 1792 Hv_44K_v2
TACTGGCTCCCCTCGCCTTCTCCGCCCTCCGCTCCGATTCGATCCATCTCGGCTTCCTCT
CCAAGCCCCTGCTCTTCCGGCCATGGCCGCCACGATCCAGTCCGTCAAGGCCCGCCAGAT
CTTCGACAGCCGCGGCAACCCCACCGTCGAGGTTGATGTGTGCTGCTCAGATGGAACCTT
CGCCAGGGCCGCCGTTCCCAGCGGTGCATCAACTGGTGTTTATGAAGCTTTGGAACTGAG
GGACGGTGGATCTGACTACTTGGGAAAGGGTGTTTCGAAGGCTGTCGACAATGTGAACTC
GATTATCGCGCCAGCTTTGATTGGCAAGGACCCTACAGCTCAAACTGAGCTCGACAACTT
TATGGTTCAGCAGCTTGATGGAACCAAAAACGAGTGGGGTTGGTGCAAGCAGAAGCTCGG
TGCTAATGCTATCCTGGCTGTGTCACTAGCTGTTTGCAAAGCTGGAGCCAGCGTCAAGAA
GATTCCGCTGTACCAGCACATTGCCAACCTTGCTGGCAACAAGCAATTGGTTTTGCCTGT
TCCTGCATTCAATGTTATCAATGGTGGTTCCCATGCTGGAAACAAGCTTGCTATGCAGGA
GTTCATGATTCTTCCTACTGGAGCTGCCTCATTCAAGGAGGCAATGAAGATGGGCGTTGA
AGTGTACCACAACTTGAAGTCTGTTATCAAGAAGAAGTATGGGCAGGATGCCACCAATGT
TGGAGATGAAGGTGGTTTTGCTCCTAACATTCAGGAGAACAAGGAGGGCCTTGAGCTCTT
GAAGACTGCAATTGAAAAGGCTGGATACACCGGCAAGGTTGTCATTGGAATGGACGTTGC
TGCTTCAGAGTTCTACAATGACAAGGACAAAACCTATGACCTCAACTTCAAGGAAGAGAA
CAACGATGGTTCCCAGAAGATATCTGGAGATAGCCTGAAGAACGTATACAAGTCATTCGT
GAGTGAGTACCCTATTGTGTCGATTGAGGACCCATTTGACCAGGATGACTGGGTTCACTA
TGCTAAGATGACTGAGGAATGCGGAGAGCAAGTTCAGATTGTTGGTGATGACCTTCTAGT
CACCAACCCAACCAGAGTTGCGAAGGCTATCCAGGAGAAGTCATGCAATGCTCTTCTGCT
GAAGGTTAACCAAATTGGATCCGTCACTGAGAGTATCGAGGCTGTGAAGATGTCAAAGCA
TGCTGGCTGGGGTGTGATGACCAGTCACAGGAGTGGTGAGACTGAGGACACATTCATTGC
TGATTTGGCTGTTGGTTTGTCCACGGGTCAGATCAAGACCGGGGCTCCCTGCCGCTCAGA
GCGGCTTGCCAAGTACAACCAGCTTCTGAGGATCGAGGAGGAGCTAGGCGCTGCCGCTGT
GTATGCCGGCCTCAAGTTCCGTGCACCGGTGGAGCCATACTAGATGGGATCTGCATCTGC
GGCACGATCACCACTCTGCACTTGTTTTTTGTGGAAGTGGGCGTGTCTCTTAACTTGCTG
AATGAACTATGGTTGAAGCTGTTAGGACTTGTCGAGCAATAATGAACCGCATGTTGCTGT
GAACTGGACGGATATGTACCCCCAAACTTGCTCCAATTTTGGTCTTTGTGGTGAGCGAGC
AAGCACGCCTGATTTGGCTCGGCCTTAACCTGTTGGATCTGTAGTGAACTGTTGGGCTGT
TGGCATCATCTTATTGGCGTCAGTTTAGTCCTGTTGCCGAAAGAAAAAAAAAAAAAAAAA
AAAACTTTTGCTTTCTGTTGTCTAAAAAAAAAAAAAAAAGAAACCTGCTTCG

Homology of Contig U35_14451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g08550.1	481	protein\|enolase, putative, expressed
Brachypodium v1_2	Bradi3g22550.2	447
Arabidopsis v10	AT2G36530.1	444	\| Symbols: LOS2, ENO2 \| Enolase \| chr2:15321081-15323786 REVERSE LENGTH=444