barSeed - Barley Seed Development Database

Probe CUST_5099_PI390587928

Source Contig U35_26441

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5099_PI390587928	Hv_44K_v2	TGTCCTGTTATCCTCCTCATCTCCTCTATCCTCGTCAAGATCAGATTTTTGTGGATCCAT	49	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354396	1288	2e-24	87 - 146	100	60 / 60	plus	ABC12811
MLOC	MLOC_37871.1	406	2e-24	214 - 273	100	60 / 60	minus	None
JLOC1	JLOC1_24570.1	416	8e-25	214 - 273	100	60 / 60	minus
Harvest21	ABC20785	507	3e-25	50 - 109	100	60 / 60	plus
Harvest35	U35_26441	581	3e-25	50 - 109	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_26441 581 Hv_44K_v2
CAGATCTTATCTTGGTGTACTTATCTCAGTTGTTTAATTTCCAGTAAACTGTCCTGTTAT
CCTCCTCATCTCCTCTATCCTCGTCAAGATCAGATTTTTGTGGATCCATCCCTCCGCCCG
GCCATGAAGCGCGCTTCCGATTCCCCGGCTGGTCGTGATCCCCGGGCTCCTCCTCCCGCT
TCCTGTGCCGGCGGCGACTCCAGCGAGCCAGCCAACAAGAAGCAGCGGCGGACCTCCAGC
TCGACCCAGCCGCCTCCACCGGAGCAGCCGAGACAGGCGCCGGACCTGGGCGAGGACGTG
GTGTTCGAGGTGCTGCGGCGGGCGGAGGCGCCGACGCTGGCCGCCGCGGCGTGCGTGAGC
CGGGGCTGGCGGGTCCTCGCGCAGGACGAGCGGCTGTGGGAGGCCGCGTGCGTGCGGGAG
TGGGCGGGCCTCGGCTTCTCGGAACACCTGCTCCGCGCCGTCGTGCTCTTGCTCGGCGGC
TTCCGCCGCGCGCACGCCGTCTCCATCAACGCCCGACGGCGGTTCGGCGGCGACTGCGGA
AACTGGCACGGCGTGCGGGCGCCGGGACAGGGGAGGAGGCG

Homology of Contig U35_26441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None