barSeed - Barley Seed Development Database

Probe CUST_5043_PI390587928

Source Contig U35_1692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5043_PI390587928	Hv_44K_v2	ATTCGAATACTTTGACAAGGACCATAGCGGGTACATAACAGTTGATGAGCTGGAGGAAGC	1094	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363357	2012	2e-24	1434 - 1493	100	60 / 60	plus	ABC04592 ABC04593
MLOC	MLOC_32468.1	1607	2e-24	353 - 412	100	60 / 60	minus	ABC04592 ABC04593
JLOC1	JLOC1_21171.1	1605	8e-25	1197 - 1256	100	60 / 60	plus
Harvest21	ABC04593	1650	3e-25	1095 - 1154	100	60 / 60	plus	ABC04593
Harvest35	U35_1692	1688	3e-25	1095 - 1154	100	60 / 60	plus

Contig Sequence (1688 bp)

>U35_1692 1688 Hv_44K_v2
CAGACCCACAAGTCAACCGGCGCGCGCTACGCCTGCAAGTCCATCGCGGCCCGGAAGCTG
GCCCGCGCCGACGACGTGGAGGACGCGCGGCGGGAGGTGCAGATCATGCACCACCTCACG
GGCCACCGGAGCATCGTCGAGCTGCGCGGCGCCTACGAGGACCGCCACTCCGTCAACCTC
GTCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCGCATCATCGCCCGCGGCCACTAC
TCCGAGCGCGCCGCCGCCACGCTCTGCCGCGAGGTCGTCAGCGTTGTCCACAGCTGCCAC
TCCATGGGGGTCATGCACCGCGACCTCAAGCCCGAGAACTTCTTGTTCTTGAATAAGCGG
GAGGACTCCCCGCTCAAGGCCACCGATTTCGGGCTCTCCGTCTTCTTCAAGCCCGGCGAG
CAGTTCAGGGATCTTGTTGGGAGTGCCTATTATGTGGCTCCGGAGGTGCTGAAGCGCCGA
TATGGAGCCGAGGCCGACATTTGGAGTGCTGGGGTGATCCTCTACATCCTCCTATCCGGC
GTTCCTCCATTCTGGGCAGAGAACGAGGAAGGTATATTTGATGCTGTTCTGAAAGGTCAC
ATTGATTTCTCGTCCGATCCATGGCCATCGATTTCAAATGGGGCTAAAGACTTGGTCAAG
AGGATGCTACGGCAGGACCCCAAGGAGCGGCTCACGGCTGCTGAAATTTTGAACCATCCA
TGGATTAGAGAGGATGGCGAGGCCCCAGACAAACCACTTGATATTACAGTGATCAGTAGA
ATGAAGCAGTTCAGGGCGATGAACAAGCTTAAGAAGGTTGCCTTGAAGATTGTTGCAGAG
AGCTTGTCAGAGGAAGAGATCGTGGGCTTAAGAGAAATGTTCAAGTCCCTGGATACTGAT
AACAGCGGGACAATTACCCTGGATGAACTAAGGGCTGGCTTACCAAAGCTTGGGACCAAA
ATTACTGAATCAGAAATAAGACAGTTGATGGAGGCGGCTGATGTTGATGGAAATGGGACC
ATTGATTATGTTGAATTCATATCGGCAACAATGCACATGAATAGACTAGAGAAGGAAGAC
CACATATTTAAAGCATTCGAATACTTTGACAAGGACCATAGCGGGTACATAACAGTTGAT
GAGCTGGAGGAAGCGCTGAAGAAGTATGATATGGGTGATGAGGCAACAATCAAAGATATC
ATTGCTGAAGTGGATACAGATCATGATGGGAAAATTAACTACCAGGAGTTTGTTGCGATG
ATGAAGAATAACAGCCCAGAGATTGTTCCAAATCGACGGCGCCTATTTTAAGTCTTGCAA
TGGTTTATGCGAAGCTTGCGATTTCTGTGAATGCGTTGACACAGGTGACCAATCAAGATC
TTAATTGGCGAGGAATGAGCGAAGCCATTCATGCTCGGCACGATTCAGTGAGGTATCTGC
AAGTGATCCTTTATACTTGGACATACTATCCGTCATCGAGAACTCCCCCCCATCATGTGT
TCTAAGCTAGGTGGCACTTTCTTGTGCTACCATGTTATACCATTCATATGTATCCTTATG
AGGCGAGCCGTCTGGTTTTGTGTTTCCTCCAATTGATCATTTATGTAAGAAAGAGTTTGT
AAGACACTCTTAAATGATCATATCAAGGAAGACCATGCAGATGATTATAGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_1692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g50810.1	566	protein\|CAMK_CAMK_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g15520.1	549
Arabidopsis v10	AT4G23650.1	529	\| Symbols: CDPK6, CPK3 \| calcium-dependent protein kinase 6 \| chr4:12324967-12327415 REVERSE LENGTH=529