barSeed - Barley Seed Development Database

Probe CUST_5020_PI390587928

Source Contig U35_532

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5020_PI390587928	Hv_44K_v2	GGTGTTGCAAATGTTACTCTTAAGGCATGACTTCTAAATGCACCATTGATTGTATTAATC	1188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40114.2	1095	7e-23	905 - 964	98	59 / 60	plus	ABC00078 ABC00225 ABC00555 ABC00840
JLOC1	JLOC1_26213.1	1088	4e-23	898 - 957	98	59 / 60	plus
Harvest21	ABC00555	817	3e-25	731 - 790	100	60 / 60	plus	ABC00555
Harvest35	U35_532	1275	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (1275 bp)

>U35_532 1275 Hv_44K_v2
CCGGTGCAGGCTGTGGCGAACTCATGCCGGACGGGAGCGGCGACGAACGTGATCTTCGGG
CTGGCAGTGGGATACAAGTCGGTCATCGTACCCATCTTCGCCATCGCGACGGCCATCTAC
GCCAGCTTCCGCCTCGCCGCCATGTACGGCATCGCGCTGGCGGCGCTGGGCATGCTCAGC
ACAATCGCCACAGGGCTCAGCATCGACGCCTACGGTCCCATCAGCGACAACGCCGGCGGC
ATCGCCGAGATGTCCGGCATGCCTCACGTGGTCCGCGAGCGCACGGATGCACTCGACGCC
GCCGGTAACACCACCGCCGCCATCGGCAAAGGGTTCGCGATCGGGTCGGCGGCGCTGGTG
TCGCTGGCGCTATTCGGCGCCTACGTGAGCCGCGCCGGGATCGCGGCGGTGGACGTGCTG
AGCCCTCAGGTGTTCGCGGGGCTGCTGGTGGGGGCCATGCTGCCGTACTGGTTCTCGGCG
ATGACCATGCGGAGCGTGGGGAGCGCGGCGCTGGCGATGGTGGAGGAGGTGCGGCGGCAG
TTCGACAGCATCCCGGGGCTGATGGAGGGCACGGCGAAGCCGGACTACGCCACCTGCGTG
AAGATCTCCACCGACGCGTCGCTCAAGAAGATGCTGGCGCCCGGCGCGCTCGTCATGCTG
AGCCCGCTGGTCGCCGGCACGCTGTTCGGCACCGAGACGCTGGCCGGGCTCCTCGCCGGC
GCGCTGGTGTCGGGGGTCCAGGTGGCGATCTCGGCGTCCAACAGCGGCGGCGCGTGGGAC
AACGCCAAGAAGTACATCGAGGCCGGCGCGTCAGCGGAGGCGCGGGCGCTGGGGCCCAAG
GGGTCGGACGCGCACAAGGCGGCCGTGATCGGCGACACCATCGGAGACCCGCTCAAGGAC
ACCTCCGGCCCGTCGCTCAACATCCTCATCAAGCTCATGGCCGTCGAGGCGCTCGTCTTC
GCGCCATTCTTCGCGGCGCACGGCGGCCTCATCTTCAAGCACCTCTGAGTTTGAATTCCG
GGTTCGCGCGTCTTGCTGCCTGGACCTGGATGACCAAGCAGAAGACTTTCGTTACCAATA
ATAATCTCTAGACTGGGAAAATTGTATGAGGTGATGAATGGTTAATGGTTATTTAGTTTC
GGACTTAATTCGAGTGCAAAACCCGCGTTAGAAAGAAATCAAACTCGTGGTGTTGCAAAT
GTTACTCTTAAGGCATGACTTCTAAATGCACCATTGATTGTATTAATCTTGCTTCTTTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_532 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06480.1	771	0.0	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi2g34930.1	782	0.0
Arabidopsis v10	AT1G15690.1	770	8e-175	\| Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 \| Inorganic H pyrophosphatase family protein \| chr1:5399115-5402185 FORWARD LENGTH=770