barSeed - Barley Seed Development Database

Probe CUST_5018_PI390587928

Source Contig U35_534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5018_PI390587928	Hv_44K_v2	AGTTATGTTTTGCCTGTAGATGGATGATGACGACGACGACGACGATGAATCTTGTATGCC	2644	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6480.3	3179	6e-24	102 - 160	100	59 / 59	minus	ABC00385 ABC00555 ABC00840 ABC37597
MLOC	MLOC_6480.2	2881	6e-24	114 - 172	100	59 / 59	minus	ABC00385 ABC00555 ABC00840 ABC37597
MLOC	MLOC_6480.1	3356	6e-24	119 - 177	100	59 / 59	minus	ABC00385 ABC00555 ABC00840 ABC37597
MLOC	AK360389	2798	7e-23	2662 - 2721	98	59 / 60	plus	ABC00385 ABC00555 ABC00840 ABC37597
JLOC1	JLOC1_4230.1	3190	3e-24	3006 - 3064	100	59 / 59	plus
Harvest21	ABC49417	308	3e-25	80 - 139	100	60 / 60	minus
Harvest21	ABC00941	712	3e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC40694	549	1e-24	247 - 305	100	59 / 59	plus
Harvest21	ABC37597	592	1e-24	57 - 115	100	59 / 59	minus	ABC37597
Harvest21	ABC00385	630	1e-24	509 - 567	100	59 / 59	plus	ABC00385
Harvest21	ABC50954	597	1e-23	29 - 88	98	59 / 60	minus
Harvest21	ABC00001	2720	1e-23	2583 - 2642	98	59 / 60	plus
Harvest35	U35_534	2781	3e-25	2645 - 2704	100	60 / 60	plus
Harvest35	U35_49017	597	1e-23	29 - 88	98	59 / 60	minus
Harvest35	U35_15212	1377	1e-23	1250 - 1309	98	59 / 60	plus

Contig Sequence (2781 bp)

>U35_534 2781 Hv_44K_v2
CTCCCTCCCCTCTCTCGTGCTACCTAATCCTCCGCGGAAGGTGGGGGAACGGGACGAACC
ACCGGGACGAAGCCAGCGTACTGATCTCAGTGGCGGAGATGGTGGCGGCGGCGATCCTGC
CGGAGCTGGCCACGCAGCTCGTGGTGCCGGTGGCGGCGGCGGTCGGCATCGCCTTCGCGG
TGCTGCAGTGGGTGCTCGTGTCCAAGGTCAAGGTCGCCCCCGAGCCGCGCGCCGAGGGAG
GGTCGGCCTCCGCCGCCGGCGGCAAGGACGGCGCCACCGAGTACCTCATCGAGGAGGAGG
AGGGCCTCAACGACCACAACATCGTCCTCAAGTGCGCCGAGATCCAGACCGCCATCTCCG
AAGGAGCAACCTCCTTCCTTTTCACTGAATACAAGTATGCCGGAGGATTCATGACCATTT
TCGCGGTCCTGATCTTCGTCTTCCTTGGCTCCATCGAGGGGTTCAGCACAAAGAGCCAGC
CTTGCCATTACAGCGTGGGCAAGACATGCAAGCCTGCTCTTGCTAATGCTGCCTTCAGCA
CAATTGCCTTTGTGCTAGGTGCGGTCACCTCTCTTGTGTCTGGTTTCCTTGGAATGAAGA
TTGCGACCTATGCGAATGCCAGGACAACTCTCGAGGCAAGGAAGGGTGTTGGGAAGGCGT
TCATCACCGCTTTCCGCTCTGGTGCCGTGATGGGCTTCCTTCTTGCTGCAAGTGGCCTTT
TTGTTCTTTACGTTGCAATCAACCTGTTTGGGCTTTATTATGGTGATGACTGGGAGGGTC
TATTCGAGGCTATCACCGGTTATGGTCTCGGCGGTTCTTCCATGGCTCTTTTTGGCCGTG
TAGGCGGTGGGATTTACACCAAAGCTGCTGATGTTGGTGCTGATCTTGTTGGGAAAGTAG
AAAGGAACATCCCTGAGGATGACCCGAGGAACCCAGCTGTCATTGCAGACAATGTTGGTG
ACAATGTTGGAGATATTGCTGGAATGGGTTCAGATCTCTTTGGTTCCTATGCCGAGTCAT
CTTGTGCTGCTCTTGTTGTTGCCTCAATCTCTTCCTTTGGAATTAACCATGAATTCACCC
CCATGATGTACCCACTCCTAATCAGCTCAGTGGGTATAATAGCCTGTTTGATAACAACTC
TTTTTGCAACTGATTTCTTTGAGGTGAAGGAGGTAGATCAAATAGAGCCTGCCCTAAAAA
GGCAGCTTATAATCTCCACTGCTGTGATGACCATTGGCATTGCACTAGTCAGTTGGTTGG
GTCTCCCATATACCTTCACAATATTCAACTTTGGTGCCCAGAAGACTGTGCATAGCTGGC
AACTATTTTTGTGTGTGGCTGTTGGTCTCTGGGCTGGCCTAGTCATTGGATTCATTACAG
AGTACTACACAAGCAATGCATACAGTCCTGTGCAGGATGTCGCCGATTCCTGCAGAACTG
GAGCTGCTACCAATGTCATCTTTGGTCTTGCTCTGGGATACAAATCAGTTATTATCCCTA
TCTTTGCCATTGCCTTCAGTATTTTCCTCAGCTTCAGCCTTGCTGCGATGTATGGTGTTG
CTGTGGCTGCTCTTGGAATGCTCAGCACAATTGCTACTGGTCTTGCCATTGATGCCTATG
GCCCTATCAGTGACAACGCTGGAGGCATTGCTGAAATGGCTGGCATGAGCCACAGAATTC
GTGAAAGAACTGATGCTCTCGATGCTGCAGGAAACACAACTGCTGCCATTGGAAAGGGCT
TTGCAATTGGCTCGGCTGCCTTGGTGTCCCTTGCTCTCTTTGGTGCCTTTGTGAGCCGTG
CTGGGATCACGACCGTTGATGTCCTGACACCTAATGTCTTTATTGGGCTCCTTGTTGGCG
CCATGCTCCCATACTGGTTCTCTGCAATGACCATGAAAAGTGTTGGAAGTGCGGCTCTCA
AGATGGTGGAGGAAGTGCGGAGGCAGTTCAACACCATCCCTGGGCTCATGGAGGGCACCG
CCAAGCCCGACTATGCGACATGTGTGAAGATCTCCACTGATGCGTCCATCAAGGAGATGA
TCCCACCGGGTGCTCTTGTCATGCTCACACCACTCATTGTTGGGACCTTATTTGGTGTTG
AGACCCTCTCTGGTGTCCTTGCCGGTGCTCTGGTTTCTGGTGTTCAGATTGCCATTTCGG
CATCGAACACCGGTGGTGCATGGGACAACGCCAAGAAGTACATTGAGGCTGGCGCATCTG
AGCATGCAAAGAGCCTGGGCCCGAAAGGCTCTGACTGCCACAAGGCCGCCGTGATCGGTG
ACACCATCGGGGACCCTCTCAAGGACACCTCGGGCCCCTCGCTCAACATCCTCATCAAGC
TCATGGCGGTTGAGTCCCTCGTGTTCGCCCCCTTCTTCGCCACCTATGGAGGAATCCTCT
TCAAGATTCTGTAGAGCAAGAAGATCGACTGTCTAGTTTTGACGGTTGGGAGCGCGCTAC
TTCATCCACATGTTATGGAGCTCCTTCAGTTGATGACCCTCTTGTGTTTTACATTTTGTT
GTTCCTGGTCTTGCGCAATCATGTTGGAACTTGTCTAGTTTTTCATTCCGGTAGCTGTAG
TAGTGGTAGCAGAGGGTAGCGAAATGGACGGCCATTCGACAGGTTTGTATTAGAGTGTCT
TGGGAGTTATGTTTTGCCTGTAGATGGATGATGACGACGACGACGACGATGAATCTTGTA
TGCCCATTGCGGATTTCGTGTCTTGAATTTTCAATGGGAGCTACTCTTAAAAAAAAAAAA
AAAAAAAAAAAATGCAATGCA

Homology of Contig U35_534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g09150.1	771	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi1g30550.1	774
Arabidopsis v10	AT1G15690.1	770	\| Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 \| Inorganic H pyrophosphatase family protein \| chr1:5399115-5402185 FORWARD LENGTH=770