barSeed - Barley Seed Development Database

Probe CUST_5017_PI390587928

Source Contig U35_535

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5017_PI390587928	Hv_44K_v2	ACTTAATTCGAGTGCAAAACCCGCGTTAGAAAGAAATCAAACTCGTGGTGTTGCAAAAAA	422	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375042	2615	7e-23	2535 - 2591	100	57 / 57	plus	ABC00078 ABC00225 ABC00555 ABC00840
MLOC	MLOC_40114.2	1095	7e-23	859 - 915	100	57 / 57	plus	ABC00078 ABC00225 ABC00555 ABC00840
MLOC	MLOC_40114.1	752	7e-23	682 - 738	100	57 / 57	plus	ABC00078 ABC00225 ABC00555 ABC00840
JLOC1	JLOC1_26213.1	1088	4e-23	852 - 908	100	57 / 57	plus
Harvest21	ABC00078	1150	3e-25	1080 - 1139	100	60 / 60	plus	ABC00078
Harvest21	ABC00555	817	1e-23	685 - 741	100	57 / 57	plus	ABC00555
Harvest35	U35_535	493	3e-25	423 - 482	100	60 / 60	plus
Harvest35	U35_532	1275	1e-23	1143 - 1199	100	57 / 57	plus

Contig Sequence (493 bp)

>U35_535 493 Hv_44K_v2
CTGAGCCCGCTGGTCCCCGGCACCTTGTTCGGCACCGAGACGCTGGCCGGGCTCCTCGCC
GGCGCGCTGGTGTCGGGGGTCCAGGTGGCGATCTCGGCGTCCAACAGCGGCGGCGCGTGG
GACAACGCCAAGAAGTACATCGAGGCCGGCGCGTCAGCGGAGGCGCGGGCGCTGGGGCCC
AAGGGGTCGGACGCGCACAAGGCGGCCGTGATCGGCGACACCATCGGAGACCCGCTCAAG
GACACCTCCGGCCCGTCGCTCAACATCCTCATCTTCAAGCACCTCTGAGTTTGAATTCCG
GGTTCGCGCGTCTTGCTGCCTGGACCTGGATGACCAAGCAGAAGACTTTCGTTACCAATA
ATAATCTCTAGACTGGGAAAATTGTATGAGGTGATGAATGGTTAATGGTTATTTAGTTTC
GGACTTAATTCGAGTGCAAAACCCGCGTTAGAAAGAAATCAAACTCGTGGTGTTGCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_535 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None