barSeed - Barley Seed Development Database

Probe CUST_49_PI415269222

Source Contig TA36639_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_49_PI415269222	Hv_44K_v2	TATCTTTGTTAACGTCCCATCGAAGAGAATCACGATGAGGGAAATAAAGAGCCACCCGTG	739	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63787.2	3347	2e-24	2682 - 2741	100	60 / 60	plus	ABC07362 ABC09216
MLOC	MLOC_63787.3	1571	2e-24	906 - 965	100	60 / 60	plus	ABC07362 ABC09216
JLOC1	JLOC1_41822.2	3274	8e-25	2553 - 2612	100	60 / 60	plus
JLOC1	JLOC1_41822.1	1624	8e-25	903 - 962	100	60 / 60	plus
Harvest21	ABC07362	1604	3e-25	973 - 1032	100	60 / 60	plus	ABC07362
Harvest35	U35_16858	1618	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1085 bp)

>TA36639_4513 1085 Hv_44K_v2
GCTGGAGGCGGAGGAGGGAGGGGATGGAGAAGTACGAGGCGGTGCGGGACATCGGGTCGG
GCAACTTCGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCA
AGTGCATCGAGCGCGGACACCGGATTGACGAGAATGTCTACAGGGAGATCATCAACCACC
GCTCGCTGCGCCACCCCAACATCATCCGCTTCAAGGAGGTGGTACTGACGCCAACAAATC
TTATGATTGTCATGGAGTTCGCAGCAGGTGGGGAGCTGTTTGAGCGGATCTGTGATCGCG
GGCGGTTCAGTGAGGATGAGGCAAGGTATTTCTTTCAGCAGTTGATCTGTGGTGTGAGCT
ACTGCCATCACATGCAAATATGCCATAGAGATTTGAAGCTGGAGAATGTTCTCTTGGATG
GCAGTGCAGCTCCACGGCTCAAAATATGTGATTTTGGCTACTCCAAGTCATCAGTACTGC
ATTCAAGGCCCAAATCAGCAGTGGGGACGCCAGCATATATTGCACCAGAGGTGCTATCCC
GACGTGAGTATGATGGAAAGCTTGCAGATGTGTGGTCTTGTGGGGTGACTCTTTACGTCA
TGCTTGTGGGAGGCTACCCATTTGAAGACCAGGATGACCCCAAGAATATACGCAAGACCA
TTCAGCGAATAATGTCTGTGCAATACACTATACCTGATCATGTCCACATATCCACGGAAT
GCAGACAGCTTATGGCCAGTATCTTTGTTAACGTCCCATCGAAGAGAATCACGATGAGGG
AAATAAAGAGCCACCCGTGGTTCTTGAAGAACCTGCCAAGGGAGCTCACTGAGACGGCGC
AGGGCATGTACTACAGGAGGGATAACGCCGTGCCTTCTTTCTCGGAGCAGACCTCAGAGG
AAATCATGAAGATTGTCCAGGAGGCAAGGACCATGCCGAAGTCATCCAGGCCAAGCTATG
GTTGGGGCGACGACGGTTCAGACGACGAGGAAGAGAAGGAGGGGGAAGACCGACCAGAAG
GAGGGAGGAGGAGGAGGACAATTACCAACAGAGGGTCAAGGAGGTCCATGCAAGCGGAGA
GCTCG

Homology of Contig TA36639_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64970.1	361	0.0	protein\|CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g56267.1	362	0.0
Arabidopsis v10	AT5G63650.1	360	5e-175	\| Symbols: SNRK2-5, SNRK2.5, SRK2H \| SNF1-related protein kinase 2.5 \| chr5:25481631-25483495 REVERSE LENGTH=360