barSeed - Barley Seed Development Database

Probe CUST_4999_PI390587928

Source Contig U35_553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4999_PI390587928	Hv_44K_v2	CCTGTTGTTGCTTGGTCATTTTCCTTTGTTGAGAACTTGAGATCAGTTACTTGTATTAAT	956	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358112	1033	2e-24	943 - 1002	100	60 / 60	plus	ABC02427 ABC02430 ABC02433 ABC02434 ABC02436
MLOC	MLOC_52831.2	1229	7e-23	1069 - 1128	98	59 / 60	plus	ABC02427 ABC02430
MLOC	MLOC_52831.1	617	7e-23	540 - 599	98	59 / 60	plus	ABC02427 ABC02430 ABC02433 ABC02436
JLOC1	JLOC1_33876.1	750	4e-23	541 - 600	98	59 / 60	plus
Harvest35	U35_553	1048	3e-25	957 - 1016	100	60 / 60	plus

Contig Sequence (1048 bp)

>U35_553 1048 Hv_44K_v2
TGTTGGCCATACTGGGCATCACAGCAAGCACACACAGTCACGCACACACACTCTCTGGAG
AAATGGCGATGGCTAGGACGACGGCGCTCCTCCTCGTCGCCGCGGCTCTCCTGGCGGCCT
CATCCAGCGCATGGGAGGTGAACATCCAGATGCCGGCGTCGGCGGCCGTGGACGATGCTG
TGGCACCGCTCATCCACGCGCTGCGGCCGCTCCTGGGCTCCGGCAAGCAAGCCGGCGTGG
CGTGCGATAGCTGGCGGCTGGGCGTGGAGGCGCACAACGTGCGGGACTGGAAGACGGTGC
CCGCCAGCTGCGAGGATTACGTCGGCCACTACATGGTCGGCGACCACTACCGCCGGGACT
CCAAGGTCGTCATCGACCAGGCCATCGCCTACGTCGACTCCCTCAAGCTCGCCGGCAACG
GCAAGGAGGTCTGGGTCTTCGACGTCGACGAGACCACCCTCTCCAACCTCCCCTACTACG
CCAAGCACGGCTTCGGGGCTACACCGTTCAACTCAACAAGCTTCAGGGCGTACGCACGGG
AGGGAAGCGCGCCAGCGCTGCCGGAGACGAAGCGGCTGTACAACAAGCTTCTCTCGGTCG
GCATCAAGCCGGTGATCCTCACCGGACGGAGGGAGAACCTGAGGGCCTCCACCACCACCA
ACCTCCGCAGCCAAGGCTACTCCAGGTGGATGAAACTGCTTCTGAAGCAGCAAGACTTCA
GGGGTTCCTCAGTGACCTTCAAGTCCGGCGAGAGGCAGAAGCTGCAGAATGCCGGTTACA
TCATTGTGGGCAACATCGGTGACCAGTGGAGCGACATCCTTGGTGCTCCCGAGGGCGCCC
GCACCTTTAAGCTTCCCGACCCCATGTACTACATCGGCTAGTTTCATCGCTCGTCATCCA
TGAATAAGCTCCATGCTCTTTAATAATTGTATGCATGCTTTGTCTGTAATCCTTCCCCTG
TTGTTGCTTGGTCATTTTCCTTTGTTGAGAACTTGAGATCAGTTACTTGTATTAATAAAT
GTGTTCCACGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g10210.1	266	5e-90	protein\|HAD superfamily phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g33317.1	286	3e-131
Arabidopsis v10	AT4G29260.1	255	5e-68	HAD superfamily, subfamily IIIB acid phosphatase \| chr4:14422310-14423409 REVERSE LENGTH=255