barSeed - Barley Seed Development Database

Probe CUST_4998_PI390587928

Source Contig U35_554

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4998_PI390587928	Hv_44K_v2	AATTAGACGTGTAAGTGGAGATGTTGCATGCTGCTTAATCAATGGATCTTTGTTATGTTG	1025	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.508	3.838	2.764	0.955	0.753	0.671
Raw	13.796	53.834	32.752	16.156	3.062	3.472

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251203.1	1188	2e-24	1018 - 1077	100	60 / 60	plus	ABC02427 ABC02430 ABC02433 ABC02434 ABC02436
MLOC	MLOC_81773.1	1752	2e-24	345 - 404	100	60 / 60	minus	ABC02427 ABC02430 ABC02433 ABC02436
Harvest21	ABC02427	1123	3e-25	1005 - 1064	100	60 / 60	plus	ABC02427
Harvest35	U35_554	1143	3e-25	1026 - 1085	100	60 / 60	plus

Contig Sequence (1143 bp)

>U35_554 1143 Hv_44K_v2
AAAAAAAAAGCACCTCAGCAAGCACCAACACACACACACACACACAAGAAATGGCGATGG
CTAGGACGACGACGCTCCTCCTCGTCGCCGCAGCTCTCCTCGCGGCCTCATGCAGCGCAT
GGGAGGTCAACATCCGCATGCCGACGTCGGCGGCGGACGTGGACGAGGCGGTGGTGGCGC
CGCTGATCCACGCGCTGCGGCCGCTGCTGGGCTCCGGCAAGCACGCCGGAGTGGCGTGCG
ACAGCTGGGTGCTGGGGGTGGAGGCGCACAACGTGCGGGACTGGAAGACGGTGCCCGCGA
GCTGCGAGGGCTACGTCGGCCACTACATGCTCGGCAGCCATTTCCGCCGCGACTCCAAGG
TCGTCATCGACCAGGCCCTCGCCTATGTCGACTCCCTCAAGCTCGCCGGCAACGGCAAGG
AGGTCTGGGTCTTCGACATCGACGAGACCACCCTCTCCAACCTCCCCTACTACGCCAAGC
ACGGCTTCGGGGCTACACCGTTCAACGCGACCAGCTTCAACGCATACGTGCTACAGGGGA
GCGCGCCAGCCCTGCCGGAGACGAAGCGGCTGTACAACAAGCTGCGCTCGATCGGCGTCA
AGCCGGTGTTCCTCACCGGCCGGACTGAGGACCAGAGGGCCATCACCGTCACCAACCTCC
GCCGCCAGGGGATCTCTGGGTGGATGAACCTCTTGCTGAAGCAACCCGGGTTCAAGGGCT
CTGCGGTGACCTACAAGTCCGGCGAGAGGCAGAAGCTGCAGGACGCCGGGTATGTCATCG
TCGGTAACATCGGCGACCAGTGGAGCGACATCCTCGGCGCGCCAGAGGGTGCCCGCACCT
TCAAGCTGCCCGACCCCATGTACTACATCGGCTAGGCCGCCTCTGGCTCGGCCGGGCATG
CTGCCATTGATTTCTCGAATAAGCTCGATGCTCTTAGTTATATGCATGTTTCGTCAGATA
ATCAATCCCCAATTGTTGCTTGGTTCATTTCCATTGTTGAGAGCTTGAGATTAATTGCTA
CTATGAATTAGACGTGTAAGTGGAGATGTTGCATGCTGCTTAATCAATGGATCTTTGTTA
TGTTGTTTTTAAAAAAAAAAAAAAAAAATCCATGGGCATTATTACTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g10330.1	309	2e-92	protein\|HAD superfamily phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g33317.1	286	2e-156
Arabidopsis v10	AT4G29260.1	255	2e-67	HAD superfamily, subfamily IIIB acid phosphatase \| chr4:14422310-14423409 REVERSE LENGTH=255