barSeed - Barley Seed Development Database

Probe CUST_4946_PI390587928

Source Contig U35_21341

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4946_PI390587928	Hv_44K_v2	GATCTTGCATCTGTTAACCCAGCAATTTATGCCATCTTTAGCTCTTTATCCTCCAAAAAA	1673	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.212	1.863	1.141	0.917	0.358	0.626
Raw	218.609	298.943	153.575	205.041	26.107	50.807

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70535.1	3194	9e-22	1998 - 2052	100	55 / 55	plus	ABC19364 ABC24329
MLOC	MLOC_70534.4	2585	9e-22	1562 - 1616	100	55 / 55	plus	ABC19364 ABC24329
JLOC1	JLOC1_46811.1	2228	5e-22	1567 - 1621	100	55 / 55	plus
Harvest21	ABC24329	583	3e-25	12 - 71	100	60 / 60	minus	ABC24329
Harvest35	U35_21341	1744	3e-25	1674 - 1733	100	60 / 60	plus

Contig Sequence (1744 bp)

>U35_21341 1744 Hv_44K_v2
CTTTTTCTCCAGTTCAACTCCGCCGCCCGCCCGCCCGCCCGCCCGTCCCCTCCCCGATCT
CGGGAGAGACATGTCCTGGCGGTGGGCTCTGGCGCGGCGCGTCGCCACGCTCGTCGGCGG
CGGAGGCCCACCCGCTGCCCAGGCGCACAGGCTCTTCTCCTCGTCGGGCGCCCTCCTGGG
GAGGCTCCCTCCCGCGCCGCCCCAGATTCGGAACAAGGTGGTGGGTTGCAGAGGAGCTGC
TTTCGTCAACTCGCGATGGCTGCATGATGCCACCCAGTATCAGACTCGCCAGGATGGGTC
ATCGAGGGCCGAAGAACAACAGGATCCATTTGAATTGGTTGCTGATGAACTATCGATTCT
TGGAAATAGACTACGGTCCATGGTGGCTGCTGAGGTCCCTAAACTAGAATCAGCTGCTGA
ATATTTTTTTAAAGTGGGAGCTGAGGGAAAAAGATTCCGACCTACGGTTTTGTTGCTGAT
GGCATCAGCTCTGAAATTCCCAATACCAGAATCGACAGATATTGGAGTTTTCAGTATATT
GGCAAGTAAGCTGCGCACACGGCAGCAAAACATTGCCGAGATAACTGAAATGATCCATGT
CGCAAGTCTTCTGCATGATGATGTTCTGGATGATGCTGACACTAGGCGAGGTGTTACTTC
ATTGAATTGCATTATGGGCAACAAGCTTTCTGTTTTGGCTGGTGACTTTCTCCTGTCCAG
AGCATGTGTGGCACTTGCAGCACTTGGGAATACCGAGGTGGTATCTCTAATGGCAACTGC
AGTTGGACATCTAGTTACTGGTGAAACTATGCAAATGTCAACAAGCAGAGAGCAACGGCG
AAGTATGGAGTACTACTTGCAGAAGACGTACTACAAAACAGCATCATTGATATCAAACAG
TTGCAAGGCTGTTGCTATTCTTGCAGGACACACTGCTGAGGTTTCAGTGCTTGCATACGA
ATATGGTCGAAACCTGGGTCTAGCCTTCCAGTTGATCGACGATGTTCTTGATTTCACAGG
AACCTCTGCATCACTTGGGAAGGGTTCATTATCTGATATTCGTCATGGAATCATTACTGC
CCCAATGCTATATGCGATGGAAGAATTCCCACAACTACATGATGTTGTTGACCAGGGTTT
TGACAATCCTGCAAATGTCGAGATCGCCTTGGAGTACCTCCAGAAGAGCCGGGGAATCGA
AAGAACGAAAGAGCTTGCGCAAGAACACGTTAATCTTGCGGTCAAAGCCATCGAATCTCT
TCCAGACAGCGACGACGAAGATGTACTGATTTCAAGGCGCGCTCTTATTGATATCACACA
GAGAGTCATCACGAGGACAAAATAGCAAGATTATACACAAGGTGGAGAAGATAAGGCGGA
GTTTCGCCAGTGTAGTGTTCCACTTGGAAAATTTTGGAAGCCTTGGTCATTGCATTCTTT
CCATTGCCCGAGTTTTTGTGTAACATTTGATGAGACTTCAGGGTAACCATTCCTGGGAAT
CGTCATAGTCGCAGCTATAGTGGTTTTAGTTACTGGGGGCAGCAGAATCTGTGTAATAGT
ATCACGATTGACGATTGCAACAATGACCTGATCATAAGACTGTAACCTTATAAATCTAAG
TATGTAACATTATATACGAGGGAACATGAATCTGCTTCTTGTGGAGAAAGCATGATCTTG
CATCTGTTAACCCAGCAATTTATGCCATCTTTAGCTCTTTATCCTCCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_21341 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46450.1	431	0.0	protein\|polyprenyl synthetase, putative, expressed
Brachypodium v1_2	Bradi1g32530.1	427	0.0
Arabidopsis v10	AT2G34630.2	422	2e-173	\| Symbols: GPPS, GPS1 \| geranyl diphosphate synthase 1 \| chr2:14578689-14581632 FORWARD LENGTH=422