barSeed - Barley Seed Development Database

Probe CUST_4918_PI390587928

Source Contig U35_45302

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4918_PI390587928	Hv_44K_v2	GGACTGCACGTGGCTGCAGTCGGAGCGGCCCATGTACCAGTTCTCCGACTTCCCGTGGCC	125	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63757.1	1614	7e-23	246 - 305	98	59 / 60	plus	ABC16392 ABC22018
MLOC	MLOC_63757.2	1884	7e-23	246 - 305	98	59 / 60	plus	ABC16392 ABC22018
JLOC1	JLOC1_41801.1	1731	4e-23	180 - 239	98	59 / 60	plus
Harvest21	ABC44023	305	3e-25	126 - 185	100	60 / 60	plus
Harvest35	U35_45302	305	3e-25	126 - 185	100	60 / 60	plus

Contig Sequence (305 bp)

>U35_45302 305 Hv_44K_v2
AGGGTGGCCATCATCGGATCCGGCGTGAACGGGCTGACGGCGTGCAAGCACCTGCTGGAG
CGGGGCTGCCGGCCGGCCGTCTTCGAGGCTGACACTCTCCTTGGCGGCGTCTGGGCGCGT
GCCCCGGACTGCACGTGGCTGCAGTCGGAGCGGCCCATGTACCAGTTCTCCGACTTCCCG
TGGCCCGAATCCGTGACGGAGGTGTTCCCGGACCGCCGCCAGGTCGCCGACTACCTCGAC
GCCTATGCCCGCCACTTCGGCGTGCTCGACTGCGTCAAGTTCGGCCGCCGGGTGGTCGGG
ATGGA

Homology of Contig U35_45302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g14690.1	522	7e-52	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi3g20960.1	520	3e-56
Arabidopsis v10	None