barSeed - Barley Seed Development Database

Probe CUST_4908_PI390587928

Source Contig U35_21356

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4908_PI390587928	Hv_44K_v2	AAGGACCAGTCCCGCAAGTACCTGGAGTATATCGACAAGGTGACGGTGAAGACCCTGAGC	760	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.235	1.242	2.005	1.522	1.133	0.427
Raw	17.843	29.468	39.402	44.992	13.154	3.508

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70966.1	2229	2e-24	1039 - 1098	100	60 / 60	plus	ABC11664 ABC14311 ABC21737
MLOC	MLOC_70966.2	2205	2e-24	1015 - 1074	100	60 / 60	plus	ABC11664 ABC14311 ABC21737
MLOC	MLOC_70966.3	2391	2e-24	947 - 1006	100	60 / 60	plus	ABC11664 ABC14311 ABC21737
MLOC	MLOC_70966.4	2415	2e-24	971 - 1030	100	60 / 60	plus	ABC11664 ABC14311 ABC21737
JLOC1	JLOC1_47126.2	2334	8e-25	952 - 1011	100	60 / 60	plus
JLOC1	JLOC1_47126.1	2310	8e-25	928 - 987	100	60 / 60	plus
Harvest21	ABC14311	995	3e-25	761 - 820	100	60 / 60	plus	ABC14311
Harvest35	U35_21356	995	3e-25	761 - 820	100	60 / 60	plus

Contig Sequence (995 bp)

>U35_21356 995 Hv_44K_v2
CAGCTCTTGCACACAGACGAAAGAAGGCAGAGCGGGAGGGAGGGAGGGAAACGATCGTCG
CGAGCGCTTCGACGGCAGCATGACCGCCGACCCTTCGTCGTCGTCGTCGACGGCCGGGGC
GCCGTCGGTGAAGGGCGTGGCGAGGACGCTGTCCCAGCACCACCGCGCCGTCGTCGGCTT
CCTCTTCGGCTTCTTCGTCATCCTCGTGCTCTACACCACGGCGTCCGGCCAGTTCGGGAC
GACCAACACCATCGTCGCCCTGCGGTCCACGCCGGCCGAACAGAATGCCAGGACTTCCCC
TCCTCCTCCAGCGTCGACACCAACGTCGTCGGCGCCAAATAATATTTCCACCCAAGCTGC
GGTACGTGACATGGAAAAAGGCAAGAAGGACGAGGCAGCCAAGACGACGGGAGAAGTACG
CATCCGAGACAAGAACGTAGCACCTGGAACCGACATGAACAACAAGACTGCAGATAGCGT
GCAAGCGAATAGGACAGGCCAGTCAGGCCAGACGGTAAATGATGCTAGTGACAGGATGGA
GGAAGAGCTCATCCGGCAGGAGCTAGGTCAAGACGGCGACAAGAATGAGAGCAACGTCAA
GCAGCTGGGTGCCCCGCCCAAGCCCGTCTGCGACCTGTCCGACCCCAGGTATGACATCTG
CGAGATCTCCGGCGACGCCCGGGCCATCGGCGGCAACCGTACCGTCCTGTATGTGCCGCC
CGCCGGCGAGCGTCGGGCCGACGGCCAGGAATGGGCCATCAAGGACCAGTCCCGCAAGTA
CCTGGAGTATATCGACAAGGTGACGGTGAAGACCCTGAGCGCCGCCCAGTCCCTGGTGGC
GCCCGAGTGCACCTCCCGGCACGCCGTCCCAGCCGTCGTATTCGCCATGAACGGGCTCAC
GTCCAACCCATGGCACGACTTCAGCGACGTGATCGTCCCGCTCTTCATCACCGCCCGCGC
CTACGACGGNGAGGTCCAGTTCCTCGTCACCGACC

Homology of Contig U35_21356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g28124.1	535	4e-79	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g09797.1	535	9e-89
Arabidopsis v10	None