barSeed - Barley Seed Development Database

Probe CUST_4875_PI390587928

Source Contig U35_42456

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4875_PI390587928	Hv_44K_v2	CTATGTTTACAATGTCCTATATAACCTGAAGTTGTACTAGCGAGATTTGTTCCTTCTCTG	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23693.1	820	2e-24	720 - 779	100	60 / 60	plus	ABC02092 ABC02093 ABC02094 ABC02097 ABC02098
JLOC1	JLOC1_16351.1	1058	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC48437	519	3e-25	170 - 229	100	60 / 60	minus
Harvest21	ABC38133	569	3e-25	510 - 569	100	60 / 60	plus
Harvest21	ABC02096	754	3e-25	594 - 653	100	60 / 60	plus
Harvest21	ABC02093	769	3e-25	608 - 667	100	60 / 60	plus	ABC02093
Harvest35	U35_42456	569	3e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_561	849	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_42456 569 Hv_44K_v2
GCTCGAAGCCCCTGCGACCGGAGCTCTCCAGACCTCTTCCTCCGCCGTCAGCCCGGAGAT
CTCCCGGCTTCTCCCTCCGCCATCATGGGGAAGACACGTGGTATGGGAGCTGGGCGCAAG
CTCAAGACCCACCGCAGGAACCAGAGGTGGGCTGATAAGGCATACAAGAAGAGCCACTTG
GGCAATGAGTGGAAGAAACCCTTTGCTGGATCGTCTCACGCCAAGGGCATTGTCTTGGAG
AAGATTGGTATTGAGGCCAAGCAGCCTAACTCTGCCATCCGTAAGTGTGCTCGTGTCCAG
CTGGTGAAGAACGGGAAGAAGATTGCTGCCTTTGTGCCTAACGATGGTTGCCTGAACTTC
ATCGAGGAAAACGACGAGGTGCTGATTGCTGGGTTTGGTCGTAAGGGTCACGCCGTGGGT
GATATCCCTGGTGTCAGGTTCAAGGTTGTCAAGGCAAGGATGGAATGCACTGTTAAGGCT
CTTGGATGTTTGAGGAGGAAAGCTGCCTGCTATGTTTACAATGTCCTATATAACCTGAAG
TTGTACTAGCGAGATTTGTTCCTTCTCTG

Homology of Contig U35_42456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60400.1	143	6e-86	protein\|40S ribosomal protein S23, putative, expressed
Brachypodium v1_2	Bradi2g54210.1	143	3e-86
Arabidopsis v10	AT5G02960.1	142	3e-81	Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142