barSeed - Barley Seed Development Database

Probe CUST_478_PI415269222

Source Contig TA33589_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_478_PI415269222	Hv_44K_v2	ATCGACATCCAGTTCAAGAGAGTGCCGTGCGAGTTCCCTGGTCTCAAGGTGACCTTCCAC	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70189.1	1340	2e-24	477 - 536	100	60 / 60	minus	ABC02873 ABC02877
JLOC1	JLOC1_46571.1	1357	8e-25	643 - 702	100	60 / 60	plus
Harvest21	ABC02877	1164	3e-25	530 - 589	100	60 / 60	plus	ABC02877
Harvest35	U35_14783	1201	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (793 bp)

>TA33589_4513 793 Hv_44K_v2
CATCAAAGCATAGCTCAGCCTTCCAACCCGGCCTGGTCAGTGCGCTGGTAAACTACCCCC
ACAAGCCTGAAGAAGCAGCGTTGCTTTGACATGGCTCCTCTCTCGTCTAAGGCCGTTGCA
CTCGTTGCACTGTCCTCCCTCCTCGTCACCTACGCCGCTGCCGGCGCCGGGACCTTCAAC
GATTCCGCCTTCACCGCCGACCCCAACTGGGAGGACGCCAGGGCCACCTGGTACGGCGCG
CCCACGGGTGCCGGCCCCATGGACGACGGTGGTGCGTGCGGGTTCAAGAACACCAACCAG
TACCCCTTCTCCTCCATGACATCGTGCGGCAACGAGCCCATCTTCAAGGATGGCAAGGGA
TGCGGCTCCTGCTACCAGATACGGTGCACCAACGACCAGTCCTGCTCCGGCAACCCGGAG
ACGGTGGTCATCACCGACATGAACTACTACCCGGTTGCCAAGTACCACTTCGACCTGAGT
GGCACCGCGTTCGGCGCCATGGCCAAGCCCGGCCTCAGCGAGAAGCTCCGGCACTCCGGC
ATCATCGACATCCAGTTCAAGAGAGTGCCGTGCGAGTTCCCTGGTCTCAAGGTGACCTTC
CACGTGGAGCAGGGGTCGAACCCGGTGTACTTCGCCGTGCTGGTGGAGTACGAGGACGGC
GACGGCGACGTGGTGCAAGTGGACCTCATGGAGGCCAACTCCGGTACGTGGGACGCCGAT
GCGCGAATCGTGGGGATCAATCTGGCGGGTGGAATCCGGCCACCGCCTCCAAGCGCCTTT
CTCCATGGCATCT

Homology of Contig TA33589_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40720.1	269	7e-121	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g33150.1	272	9e-124
Arabidopsis v10	AT1G65680.1	273	1e-52	\| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 \| expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273