- Probe CUST_4716_PI390587928
- Source Contig U35_21108
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_4716_PI390587928 | Hv_44K_v2 | GAATGTGGCTTGAGTTTTTTATTGGTTCAATCCAACAATAAAGGATGTGCTTCTTATTGG | 448 | GeneList: plum2 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.012 | 0.264 | 1.627 | 2.368 | 1.276 | 1.239 |
Raw | 17.064 | 756.612 | 4125.437 | 7827.367 | 1858.389 | 1924.207 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_51430.1 | 956 | 9e-22 | 197 - 254 | 98 | 57 / 58 | minus | ABC14979 |
JLOC1 | JLOC1_32857.1 | 732 | 5e-22 | 481 - 538 | 98 | 57 / 58 | plus | |
Harvest21 | ABC14980 | 560 | 1e-24 | 450 - 508 | 100 | 59 / 59 | plus | |
Harvest21 | ABC14979 | 501 | 4e-24 | 433 - 490 | 100 | 58 / 58 | plus | ABC14979 |
Harvest35 | U35_21108 | 560 | 3e-25 | 449 - 508 | 100 | 60 / 60 | plus |
Contig Sequence (560 bp)
>U35_21108 560 Hv_44K_v2 GGTGAAATGACTATAAGAAGGAGGACCATGCTGATTACTCTTCTCGTTGTTTTGCTCGCC TTTTCAGGCCCAATCAAAGGAGAAGATCAGTTGGGAAGAGGTGATGGCGGTGACTTGGCC CCTCCTTCGGATCCAGGGAGCAGTCACTTGGCTCCTCCTCCACCTCCTCCATCTCGAAAG ATCAATCCACCTCCACCTCCAAAGACAGATTTGCCTCCTCCTCCACCTCCACCTCCAAAG ACTGATCTTACCCAGCCGCCTTCAGGATCATGTGTGGAAGTGAAGTTGTACAGAGGGCCG TGCATCAACATGCTTTGCGCTGGTGCATGTATCGCACAGTTGCATCAGGGCGGCCACTGT CGTGGGAGTATTTTTACTGGTGGTTGCTATTGTTTCGTGTGTTCCATAACAAAGTCTAGT CCGTCATTACATTGATGTGGAACATGCAGAATGTGGCTTGAGTTTTTTATTGGTTCAATC CAACAATAAAGGATGTGCTTCTTATTGGATTTCTCTTTTAATAACAAAAAGTAAGTGAAT AGGCTTTCTACTTTGTTCGA
Homology of Contig U35_21108 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |