barSeed - Barley Seed Development Database

Probe CUST_4688_PI390587928

Source Contig U35_1747

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4688_PI390587928	Hv_44K_v2	TGAGGAGTACCATGTATTGGGTTCATGATGATGTTAATCAGGATTGGTTCATTTCAATCA	877	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58764.3	1484	9e-22	18 - 72	100	55 / 55	minus	ABC04676 ABC04677
MLOC	MLOC_58764.2	2246	9e-22	38 - 92	100	55 / 55	minus	ABC04676 ABC04677
MLOC	MLOC_58764.1	2571	9e-22	51 - 105	100	55 / 55	minus	ABC04676 ABC04677
JLOC1	JLOC1_38205.2	2213	5e-22	2085 - 2139	100	55 / 55	plus
JLOC1	JLOC1_38205.1	585	5e-22	457 - 511	100	55 / 55	plus
Harvest21	ABC04677	953	3e-25	878 - 937	100	60 / 60	plus	ABC04677
Harvest35	U35_1747	953	3e-25	878 - 937	100	60 / 60	plus

Contig Sequence (953 bp)

>U35_1747 953 Hv_44K_v2
GACGCGCTACGTGGCCGCCTGCCGCAGGCCATCTTCGGACAGGGGTACGGGATGACGGAG
GCGGGGCCGGTGCTGTCCATGTGCCCGGCGTTCGCCAGGGAGCCGACGCCGGCCAAGTCC
GGGTCGTGCGGCACGGTGGTGCGCAACGCGGAGCTCAAGGTGGTCGACCCGGACACGGGC
CTGTCCCTCGCCCGCAACCTCCCCGGCGAGATCTGCATCCGCGGCCCGCAGATCATGAAA
GGCTACCTGGACGACCCCGTGGCCACCGCCGCGACCATCGACGTCGAGGGGTGGCTCCAC
ACCGGCGACATCGGCTACGTCGACGACGACGACGAGGTCTTCATCGTCGACCGCGTCAAG
GAGCTCATCAAGTTCAAGGGCTTCCAGGTGCCGCCGGCCGAGCTGGAGGCTCTGCTCATC
GCGCATCCCTCCATCGCCGACGCCGCCGTCGTCCCGCAAAAGGATGACGCCGCCGGTGAG
GTCCCGGTGGCGTTCGTGGTGCGCGCCGCCGATTCTGACATCGCCGAGGAGGCCATCAAG
GAGTTCGTATCCAAGCAGGTGGTGTTCTACAAGAGGCTGCACAAGGTGTACTTCACCCAC
GCGATCCCCAAGTCGGCGTCGGGGAAGATACTGAGGAAAGAGCTCAGAGCCAAACTCGTC
ACTGTCTGAACATCGAACAACAACCACTGCAACCTCCATGCCAAAATGTAAGACGTTTTT
TGAGGGATTACGTCCTAATCATTTTTGGACGGACGGCAATTCCAAGATATATATATGTTT
CGCCTTTTTCGTCATTTGGAAGATTGTGCCTGTCAGTGAGGCATGGAGGATGGAAGTTTT
GTCTATACCATGTTTTTGTATGCTATACTCTGTCCATTGAGGAGTACCATGTATTGGGTT
CATGATGATGTTAATCAGGATTGGTTCATTTCAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46970.1	570	1e-140	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g52350.1	575	1e-142
Arabidopsis v10	AT1G65060.1	561	1e-112	\| Symbols: 4CL3 \| 4-coumarate:CoA ligase 3 \| chr1:24167385-24171457 REVERSE LENGTH=561