barSeed - Barley Seed Development Database

Probe CUST_4687_PI390587928

Source Contig U35_1748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4687_PI390587928	Hv_44K_v2	ACCCAGCTTGCTTTGTTGAACTAATTTGTTGTTTCATGCATATGAGATGCTGAGTTATTT	896	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56084.1	1113	2e-24	981 - 1040	100	60 / 60	plus	ABC04890
JLOC1	JLOC1_36248.1	1226	8e-25	923 - 982	100	60 / 60	plus
Harvest21	ABC04890	1053	3e-25	897 - 956	100	60 / 60	plus	ABC04890
Harvest35	U35_1748	1054	3e-25	897 - 956	100	60 / 60	plus

Contig Sequence (1054 bp)

>U35_1748 1054 Hv_44K_v2
GGGTGGGCACGAGGGCACAGCACTGCTCCACTTCGCCTTCTCCTCCAAGCCACGAACTCC
GGCGACTCCCCACCACCAGCCCCCCGAGCAGCCCGCCCACTCCGACCACCGCCATGTCGA
GGCGCGGCGACTGGGTCTACGAGAACAACGGCGGGACCTGCGTGGCCATCGCCGGCGCGG
ACTACTGCGTGGTCGCCGCCGACACCCGCCTCTCCGTCGGATACAACATCCTCACGCGCG
AGCACTCCAAGATCTGCGAGCTGGCCGATAAATGTGTAATAGCATCTTCTGGCTTCCAAG
GTGACATCAAAGCTCTACAGAAGAACTTAGCAGCCAGAGAACTGCTATACCAGCACCAGC
ACAATAAAAGGATGAGCTGCCCAGCAATGGCACAATTGCTCTCCAACACCCTGTACTACA
AGCGATTCTTCCCATACTATGCTTTCAATGTGCTTGGTGGGCTCGACAGTGAAGGGAAAG
GATGTGTCTACTCATATGACGCTGTTGGGTCCTATGAGAGGACTGGTTACAGTGCACAGG
GATCAGGATCTACCTTGATCATGCCAGTGTTGGACAACCAGCTGAAATCACCTAGTCCAC
TATTAGTCCCTGCAAGAGATGCCGTCACCCCTTTGTCCGAATCAGAGGCGGTCGACCTAG
TTAAGGATGTCTTTGCATCCGCAACTGAGAGGGACATCTACACTGGGGACAAAGTGGAGA
TTGTAGTCATCAACAAAGCTGGGACGAGGCGTGAGTACATTGAGTTGAGGAAGGACTAAG
CTTGCGCTGCTGCAGTTGCCATTTGCTTCCCTAGATATAGGGAATTATTATGCCCAGAGC
TGCTACTTTGATAGAAACACCCGTGCTTGCTTTGCTTCCGTGCTGTACCAGGATCGACCC
AGCTTGCTTTGTTGAACTAATTTGTTGTTTCATGCATATGAGATGCTGAGTTATTTGTTG
GAAAAAAAAAAAAAAAAAGTACGTTCATGATAACCCACAAAAAAAAAAAAAAAAAGGGCA
TCTTGAACAGCAGGCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32800.1	222	1e-150	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi4g34620.1	224	9e-152
Arabidopsis v10	AT3G60820.1	223	6e-118	\| Symbols: PBF1 \| N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein \| chr3:22472038-22473809 REVERSE LENGTH=223