barSeed - Barley Seed Development Database

Probe CUST_4686_PI390587928

Source Contig U35_1749

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4686_PI390587928	Hv_44K_v2	TTTAGCTCGTCAATTGATTCGACGGAACGCATGCTAAGCTGGGTTGAAATGATCTCACAC	1975	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358395	1882	2e-24	1776 - 1835	100	60 / 60	plus	ABC04589 ABC27008
MLOC	MLOC_71042.2	1540	2e-24	1438 - 1497	100	60 / 60	plus	ABC04589 ABC27008
JLOC1	JLOC1_47182.2	5009	8e-25	2064 - 2123	100	60 / 60	plus
JLOC1	JLOC1_47182.1	4383	8e-25	1438 - 1497	100	60 / 60	plus
Harvest21	ABC04589	2065	3e-25	1976 - 2035	100	60 / 60	plus	ABC04589
Harvest35	U35_1749	2065	3e-25	1976 - 2035	100	60 / 60	plus

Contig Sequence (2065 bp)

>U35_1749 2065 Hv_44K_v2
CTCCTCCACCCAGCCAGACCAGAGCAGAGGAGAGGAGAGCCTCCACCCCATCCAGGTCGG
TTTCGCCGCTTTGCTCCCGCTGACGGTTCCGTGAGAGCGAGGCGACCACCAACCAACAGC
GGAGTGGGCCGACGGAGCTTTGATGCGCCAGGCGCGGCCTCCCCCCGTCCTTTGATGGGC
AACGCATGCGGCGGTTCCCTTAGATCCAAGTACCTGCACAGCTTCAAGCACCCCGCCTCC
CAGCGCCACGACCCCGACCGCGACTACGACCCCAACCCCAACCCCAACCCCGCCGCCGCA
GCCGACTCCCCGAAGAAGACCAAGCCGGCCGCCAAGATGGACGGCCACGCGGCCCCCGCG
CAGCCCGCCGCGGCCATGAGGCGCGGCGGGGCGGGCGCCCCCGCCGACCTCGGCTCCGTC
CTCGGCCACCCCACGCCCAACCTGCGCGACCTCTACGCGCTCGGCCGGAAGCTCGGGCAG
GGCCAGTTCGGCACCACCTACCTCTGCACCGAGCTCGCCACGGGGGCCGACTACGCCTGC
AAGTCCATCTCCAAGCGCAAGCTCATCACAAAGGAGGACATCGACGACGTGCGACGCGAG
ATCCAGATCATGCACCACCTCTCCGGACACAAGAACGTCGTCGCCATCAAGGGCGCCTAC
GAGGACCAGCTCTACGTGCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGAC
CGCATCATACAGCGGGGACACTACAGCGAGCGCAAGGCCGCCGAGCTCACCAGGATCATC
GTCGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCCGAG
AACTTCCTGCTCGCCAACAAGGACGACGACCTCTCGCTCAAGGCCATCGACTTCGGGCTC
TCCGTCTTCTTCAAGCCTGGCCAAATTTTCACCGATGTTGTTGGAAGCCCATATTATGTA
GCGCCAGAAGTGCTGTGCAAAAAATATGGACCAGAAGCTGATGTCTGGACCGCTGGTGTA
ATTCTCTACATTCTGCTAAGCGGTGTACCCCCATTTTGGGCAGAGACGCAGCAAGGAATA
TTTGATGCTGTACTGAAAGGTGTCATCGATTTTGATTCTGAACCCTGGCCTGTGATATCT
GACAGTGCAAAAGATCTGATAACAAGAATGCTCAATCCTCGCCCAGCTGAACGCTTGACA
GCACACGAAGTTCTATGCCATCCATGGATTCGTGATCATGGAGTTGCTCCTGATCGTCCT
CTTGACACAGCTGTCTTATCTCGCATCAAACAATTCTCTGCGATGAATAAGTTGAAGAAG
ATGGCTTTGCGGGTAATAGCTGAAAGCCTCTCAGAGGAGGAAATTGCAGGGCTGAAGGAA
ATGTTCCAGACTATGGATGCCGATAACAGTGGTGCAATTACATATGATGAGCTCAAAGAA
GGCTTGAGAAAATATGGCTCCACATTAAAGGATACTGAGATTCGTGATCTTATGGACGCG
GCGGATGTGGACAACAGTGGGACCATTGACTATATAGAGTTCATCGCTGCAACATTGCAT
CTGAATAAACTGGAGCGTGAGGAGCATCTGGTGGCAGCCTTTTCATATTTTGACAAAGAT
GGAAGTGGTTACATCACAGTGGATGAGCTGCAGCAAGCTTGCCTGGAGCATAACATGCCA
GATGCTTTTCTTGATGATGTCATTAAAGAAGCTGACCAGGACAATGATGGGCGCATTGAC
TATGGAGAATTTGTTGCCATGATGACCAAAGGCAACATGGGGGTCGGGCGAAGAACAATG
AGAAACAGCCTGAATATCAGCATGAGAGACGCACCTGGTGCAATCTAGACTTCCACGATG
TATATACAGCTTGTGGCTTTAGCTTCTTCCCGTCTTCCCGCTCCATCGAAGCCTTCCTGC
AAATTATCGAATCTTGTAAAATGCCTGTGTGGATGTGTGTTTCTGTGGATTCTGATTTAG
CTCGTCAATTGATTCGACGGAACGCATGCTAAGCTGGGTTGAAATGATCTCACACGTTGC
TGCTGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g49510.1	552	protein\|CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi5g19430.1	562
Arabidopsis v10	AT4G35310.1	556	\| Symbols: CPK5, ATCPK5 \| calmodulin-domain protein kinase 5 \| chr4:16802436-16804628 FORWARD LENGTH=556