barSeed - Barley Seed Development Database

Probe CUST_4677_PI390587928

Source Contig U35_1758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4677_PI390587928	Hv_44K_v2	CAGTGAGATCTCACTCTGCAAGCAGTATATATCCAATTGACGAGCTATTTTATTCAAAAA	2164	GeneList: turquoise MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.837	2.174	1.941	0.786	0.185	0.195
Raw	3046.040	5486.567	4258.070	2755.702	222.918	259.872

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364842	2295	3e-22	2237 - 2292	100	56 / 56	plus	ABC03391 ABC04970 ABC39160
MLOC	MLOC_39594.1	1200	3e-22	963 - 1018	100	56 / 56	plus	ABC03391 ABC04970 ABC39160
MLOC	AK374484	2384	9e-22	2330 - 2384	100	55 / 55	plus	ABC03391 ABC04970 ABC39160
JLOC1	JLOC1_25823.1	1175	1e-22	971 - 1026	100	56 / 56	plus
Harvest21	ABC04970	2236	3e-25	2165 - 2224	100	60 / 60	plus	ABC04970
Harvest35	U35_1758	2236	3e-25	2165 - 2224	100	60 / 60	plus

Contig Sequence (2236 bp)

>U35_1758 2236 Hv_44K_v2
GCACCATCTATCCTACCCCGTTGCCGCCGTGCCGGTGCCACACGACCACCACCGCCATTT
CTGGTCAGGAGGCTCCTCCCCCCGCTCCTGCGCCGGCACAGGATGGCGCTGCTCACGGCC
CCCGCGGTGTTCGCCGCGCTCCTGCTCTTCTGGGCCGTGCTCGGCGGCACGGACGCCGAC
TACGTGCTCTACAAGGACGCCACCAAGCCCGTGGAGGACCGCGTCGCCGACCTCCTGGGG
AGGATGACGCTGGCGGAGAAGATCGGGCAGATGACCCAGATCGAGCGGCTCGTGGCCACG
CCGGACGTGCTCCGGGACAACTTCATCGGCAGCCTGCTCAGCGGCGGCGGCAGCGTGCCG
CGCAAGGGGGCCACGGCCAAGGAGTGGCAGGACATGGTGGACGGCTTCCAGAAGGCCTGC
ATGTCCACGCGGCTCGGCATCCCCATGATCTACGGCATCGACGCCGTCCACGGCCAGAAC
AACGTCTACGGCGCCACTATCTTCCCCCACAACGTCGGCCTCGGCGCCACCCGGGACCCG
TACCTCGTGAAGAGGATCGGCGAGGCCACCGCGCTCGAAGTCAGAGCCACCGGCATCCAG
TACGCCTTCGCGCCTTGCATCGCGGTGTGCAGAGATCCGAGATGGGGGCGGTGCTATGAG
AGCTACAGCGAGGATCGCCGGATCGTGCAGTCCATGACGGAGCTCATCCCCGGCCTGCAG
GGCGACGTCCCCAAGGACTTCACCAGCGGCATGCCCTTCGTCGCCGGAAAGAACAAGGTG
GCTGCATGCGCGAAGCATTTTGTGGGCGACGGCGGCACGGTGGACGGCATCAACGAGAAC
AACACCATCATCAACCGTGAGGGCCTGATGAACATCCACATGCCGGCGTACAAGAACGCC
ATGGACAAGGGCGTCTCCACCGTCATGATCTCCTACTCCAGCTGGAACGGGGTCAAGATG
CACGCCAACCAAGACCTCGTCACCGGATACCTCAAGGACACGCTCAAATTCAAGGGCTTC
GTGATCTCAGACTGGGAGGGCATTGACAGGATCACCACCCCTGCCGGATCTGACTACTCC
TACTCGGTCAAGGCTTCCATTCTTGCCGGCCTTGACATGATCATGGTGCCGAACAACTAC
CAGCAGTTCATCAGCATCCTGACCGGCCATGTCAACGGCGGCGTCATCCCCATGAGCAGG
ATCGACGATGCCGTGACCCGGATCCTGCGGGTCAAGTTCACCATGGGTCTCTTCGAGAAC
CCCTACGCTGACCCTGCCATGGCCGAGCAGCTAGGAAAGCAGGAGCACAGGGATTTGGCG
AGGGAGGCGGCGAGGAAGTCGCTGGTGCTGCTGAAGAACGGCAAGACTTCGACCGACGCG
CCGCTTCTGCCGCTGCCCAAGAAGGCGCCCAAGATCCTGGTCGCCGGGAGCCACGCCGAC
AACCTGGGCTACCAGTGCGGCGGCTGGACCATCGAGTGGCAGGGCGACACGGGCCGCACC
ACCGTGGGCACCACCATCCTGGAGGCGGTGAAGGCGGCCGTGGACCCGTCGACGGTCGTG
GTGTTCGCCGAGAACCCCGACGCGGAGTTCGTCAAGAGCGGCGGCTTCTCCTACGCCATC
GTTGCCGTGGGCGAGCACCCGTACACGGAGACCAAGGGCGACAACCTGAACCTGACCATC
CCGGAGCCCGGCCTGAGCACCGTGCAGGCGGTGTGCGGCGGCGTGCGGTGCGCGACGGTG
CTCATCAGCGGGCGGCCCGTGGTGGTGCAGCCGCTGCTGGCCGCCTCCGACGCGCTGGTG
GCGGCGTGGCTCCCCGGCTCGGAGGGGCAGGGAGTCACCGACGCGCTGTTCGGCGACTTC
GGGTTCACCGGGAGGCTGCCGCGGACGTGGTTCAAGTCGGTGGACCAGCTGCCGATGAAC
GTCGGCGACGCGCACTACGACCCGCTCTTCCGGCTCGGATACGGCCTCACCACCAACGCG
ACGAAGAAGTACTAGGTTATTATACTAGACAGCATAATGGAGATAGGAAAACTGGGGACA
TGAACCGTAGGTTCTTGCTTCCCGCCATGGCTGCCGATCGATTTATTTCGCTCTCGGCCG
ATATTTCTTACTGTTGCTTACTACTGCTATTCTTTCTTACTGTTGCTGGTTGATCTGGTG
TATTCAGTGAGATCTCACTCTGCAAGCAGTATATATCCAATTGACGAGCTATTTTATTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g53860.4	627	protein\|periplasmic beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g08550.2	631
Arabidopsis v10	AT5G20950.1	624	Glycosyl hydrolase family protein \| chr5:7107609-7110775 REVERSE LENGTH=624