barSeed - Barley Seed Development Database

Probe CUST_4660_PI390587928

Source Contig U35_1775

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4660_PI390587928	Hv_44K_v2	CAGTCTTTGGATGGCTCTCCACCACAAAAGATTAGTGTTTGTACCATCATTGCTACAAAT	698	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.306	0.499	1.173	1.637	0.952	1.252
Raw	41.697	107.907	218.047	481.562	98.491	139.719

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04541	924	3e-25	699 - 758	100	60 / 60	plus	ABC04541
Harvest35	U35_1775	940	3e-25	699 - 758	100	60 / 60	plus

Contig Sequence (940 bp)

>U35_1775 940 Hv_44K_v2
GAGACAAAGTTGCAGCGTCAGCGCGACCTGCCCGTGCCCGCCCCACCTACCGCCGCCGGC
CGCCCAATCGATTGGCAATGTCGCGGCCCGCCGGCAATCCCCCGTACGCCGTCGAGCTCG
GCGCCGCGAAGAAGGCCGTCTCCCTCGCCGCCCGCCTATGCCAGACGGTGCAGCAGGAAA
TCGTGCAGTCAGACATTCAATCTAAGGCGGATAAGACTCCTGTCACCGTAGCTGATTATG
GATCTCAGGTATTGGTGAGTCTTGTGTTAAATATGGAAGTAACCTCTGGTTCCTTTTCTA
TGGTGGCCGAGGAGGATTCAGAAGACTTGAGAAAGGATGGCGCTGACGAAATTCTGGAGC
GCATTACTGATCTCGTAAACAAAACTCTCGCTGAGGATGGTTCATACAACATTTTATTAT
CTAAGGAAGCTATCCTCTCTGCACTTGATACCGGGAAGTCCGAGGGTGGTCCATCTGGCC
GACATTGGGTTCTAGATCCAATTGATGGGACTAAAGGATTCGTGAGAGGAGGCCAATATG
CCATTGCACTGGCACTGCTTGATGAGGGCAAAGTTGTCTTAGGTGTGTTGGGATGTCCAA
ATCTTCCTTTGACATCAATAAGTAACCTCAGTGATAGCTCATCAAGAGATCAAACCGGGG
CCCTCTTTTCAGCTGCAATCGGTTGTGGTGCTGAAGAGCAGTCTTTGGATGGCTCTCCAC
CACAAAAGATTAGTGTTTGTACCATCATTGCTACAAATAAACAGTTGATGCCATCAGTCC
TGAAGTCTGTCCAGGAGGCAATCAAGGAGAAAAAACAGGCCTCTTCTCCATTGTAAAAGG
TTTTTTAACCTTCCCTGTTACTGAAGTTGGATTGGTCCAAAATAATGATCGCTATGCTAC
TCCTTGTTCATTTATTCACACTGTTTATGTGTAAGTGACC

Homology of Contig U35_1775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08280.1	359	1e-105	protein\|inositol-1-monophosphatase, putative, expressed
Brachypodium v1_2	Bradi4g40860.1	425	1e-124
Arabidopsis v10	AT5G63980.1	407	3e-79	\| Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 \| Inositol monophosphatase family protein \| chr5:25609840-25611802 FORWARD LENGTH=407