barSeed - Barley Seed Development Database

Probe CUST_4639_PI390587928

Source Contig U35_21605

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4639_PI390587928	Hv_44K_v2	GCTGTTCTGTAAACTACACTTGTTTGTGCAGTAAATTGTTGGTTCATCTTCTTGAAATCT	585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63721.2	3730	2e-24	1757 - 1816	100	60 / 60	plus	ABC15014
MLOC	MLOC_63720.2	1702	2e-24	586 - 645	100	60 / 60	plus	ABC15014
MLOC	MLOC_63721.3	1955	2e-24	656 - 715	100	60 / 60	plus	ABC15014
JLOC1	JLOC1_41770.4	3277	8e-25	1508 - 1567	100	60 / 60	plus
JLOC1	JLOC1_41770.1	2384	8e-25	615 - 674	100	60 / 60	plus
Harvest21	ABC15014	720	3e-25	586 - 645	100	60 / 60	plus	ABC15014
Harvest35	U35_21605	720	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_21605 720 Hv_44K_v2
CGTTCCTCCAGGTGGTCGGCTCGCCGCCTCCCCTTGGCCCCCCGCCGCGCCGCGTGTCCC
GCCGCTTCTCCTCCCTCTCCTCCTCCTCCCCCCTGGCTCTGTCCGCCTCCCCGCTGCCGT
GCCCGTGATATAGCCACGGGCTTTCTCCGAGAAGAGCGCATCGCAGGCGAGCGCGCGAGG
GGTCGGGGAAGGGAAGAGGATGTCGCTGGGGGCGGTGTTCCACGGCGCGCAGCTGTTGCT
GGATCTGGCGGTGGCCGGGCTGTCGCTGATGTTCGCGCTCGGCCTCTTCGCCGTCGTCAC
CACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCATCGCGTCGTAGCCGCG
AGCCGCCTCCCGCCAAGTCCACGGCCCCCTCGGCGCATCCTAATCGAATGAGATTGCTGT
TGGGAGGTAATACCTTCTTGTGCACCATTTGTCCAGCAGAAGGTGCTCCATCTGACGCTG
CTTCTGCTTTTAGGGAAGTACTGTAGACGCAAAGAGTAGGAATTGCACATATCAGGTGAT
AGCTGGAGGCTCTTGTACCTTGTATTACTTGTCATGTCTACTTAAGCTGTTCTGTAAACT
ACACTTGTTTGTGCAGTAAATTGTTGGTTCATCTTCTTGAAATCTTCTACATCTTATTGT
TTATAAATGTACTGTACATTGTCTAATGCTTCTTATATGGAAAGGCCGGATATTCCTAAA

Homology of Contig U35_21605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None