barSeed - Barley Seed Development Database

Probe CUST_4628_PI390587928

Source Contig U35_26

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4628_PI390587928	Hv_44K_v2	CCTGCATTGTCTATTTTTCTTCCATCTAATCAATGGGCTCACCTATCTTCCACCAAAAAA	916	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59149.1	1848	3e-21	1793 - 1846	100	54 / 54	plus	ABC01244 ABC01246 ABC01247 ABC01249 ABC48413 ABC48525
JLOC1	JLOC1_38466.2	1836	2e-21	1704 - 1757	100	54 / 54	plus
JLOC1	JLOC1_38466.1	1305	2e-21	1173 - 1226	100	54 / 54	plus
Harvest21	ABC01244	989	2e-22	917 - 978	97	60 / 62	plus	ABC01244
Harvest35	U35_26	987	3e-25	917 - 976	100	60 / 60	plus

Contig Sequence (987 bp)

>U35_26 987 Hv_44K_v2
GCACAGCTCCAACCAGTCTAGCCGATCAGACACGCTCTCCTCGCCGCCAAGATGTTCGGG
TTCGGGCACCACCATGGGCAACAACCCCCACGCCATGGGCGGCGGCCCGCCCGTGCACGC
CGTGCGCGTCTTCTGCAAGGCCGGCGAGGACTACAGCCTCACCGCCCGCAACGGTACCGT
CTGCCTCGCCCCCACCAACCCCAGGGACGACTACCAGCACTGGATCAAGGACATGAGGCA
CAGCAACAAGATCAGGGACGAGGAAGGGTACCCTGCGTTCGCGATTGTGAACAAGGTCAC
CGGCGAATGCATCAAGCACTCCACCGGCCAGGGCCACCCCGTGAAGCTGGTGCCGTACAA
CCCGGCGTACCAGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGTGGGCAAGGGCTT
CCGCTGCGTGCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTTCCACGGCGACAA
GGCCCACGGCGGCGTCCACGACGGCACCGAGGTCGTGCTCTGGAAGTGGTGCGAGGGCGA
CAACCAGCGCTGGAAGATCCTCCCCTGGTAGATGCTGTACCAGGAGATCTGCTGCATTGC
CATCGACACATCGCCATGGATCAGTCCGGGGACAAGCCCCCCCGAGTCGTCGTAGTCGTC
GTGTCCGTCCGTCCGTCGTCGTCGTCGTAGTCCTCCTGCTGCTGCTAGCGAATAATGTTG
CTGTGTCCAAATAAAACCGTGTGCGATGTGTGGCAATGGTGTTTGCGTGTGTTGCCTTGC
GATTGAGTCGGTTTTGCTGCGAGGAAGAAGAGGGTGTTGGAGAGAGTGGGGAGGGACCAT
GATTCTAAGGTCTGAACTTTGATGTAACTCGACTGTGTTTTCTTGGTACTGGGACCTGTA
CTGTGCTACTCTGTGACCTGCATTGTCTATTTTTCTTCCATCTAATCAATGGGCTCACCT
ATCTTCCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48490.4	293	2e-106	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi1g17460.1	346	2e-111
Arabidopsis v10	AT2G39050.1	317	2e-59	hydroxyproline-rich glycoprotein family protein \| chr2:16303427-16305336 FORWARD LENGTH=317