barSeed - Barley Seed Development Database

Probe CUST_4626_PI390587928

Source Contig U35_28

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4626_PI390587928	Hv_44K_v2	AAGCTCATTTGATTCCAGGAAGCTCTCTAGGCTAGATTGCTAGAACAGCAGTTACCATGG	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80115.1	1173	2e-24	1079 - 1138	100	60 / 60	minus	ABC02951 ABC02952 ABC02957 ABC02958
JLOC1	JLOC1_53355.1	1251	8e-25	108 - 167	100	60 / 60	plus
Harvest21	ABC02956	850	3e-25	222 - 281	100	60 / 60	plus
Harvest35	U35_28	646	3e-25	17 - 76	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_28 646 Hv_44K_v2
GGCACTCCACTTTATAAAGCTCATTTGATTCCAGGAAGCTCTCTAGGCTAGATTGCTAGA
ACAGCAGTTACCATGGCACGGCGTCTTCTCGCTGTGCTCGCCGTGGCTCTTGCGCTCTTG
CAGGCCGCCTCGGCCAAGTCCTGGCTCGACAAGAGGTTCAACACGGACGGCACCGTCCGC
ACGGGATACGACGCCTCGGGCCAGCAGGTGGTGATGCTCAACCTCAACCAGCAATCCGGC
GCCGCCGGCTTCAACTTCCAAGCAGCAGTACCTCTATGGTGAGTTCAGCATCCAGATGAA
GCTCATCCCGGGGAACTCCGCTGGCACCGTCTCCTGCTTCTACCTTTCTTCCGGTGACGA
CGAGTGGCGCGACGAGATCGACATGGAGTTCATGGGCAACTCCAGCGGCCATCCGGTGGT
GCTCAACACGAACGTGTGGGCCAACGGCGACGGCAAGAAGGAGCACCAGTTCGACCTCTG
GTTCGACCCCGCCGCCGACTACCACACCTACACCATCATCTGGAACCCGGAGAACATCCT
GTTCAAGGTGGACAACCTCTTCATCCGATCCTTCAAGCGCTTCGCCGGCCTGCCCTACCC
TACCTCCAAGCCCATGAGGCTGCACGCCACGCTCTGGGACGGCAGC

Homology of Contig U35_28 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	3e-66	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18600.1	302	6e-66
Arabidopsis v10	None