barSeed - Barley Seed Development Database

Probe CUST_4620_PI390587928

Source Contig U35_21614

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4620_PI390587928	Hv_44K_v2	ATTGAAGAGAGGTTGTCCACATGCTTATGCTAGTAATGGAAAGTACACAAATTTAATGTC	634	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.284	2.144	1.080	0.787	0.396	0.526
Raw	40.736	60.269	26.574	31.984	4.445	7.672

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18367.4	1484	2e-24	499 - 558	100	60 / 60	plus	ABC14947
MLOC	AK357466	636	7e-23	577 - 636	98	59 / 60	plus	ABC14947
JLOC1	JLOC1_12712.3	545	8e-25	306 - 365	100	60 / 60	plus
JLOC1	JLOC1_12712.1	563	8e-25	324 - 383	100	60 / 60	plus
Harvest21	ABC14947	581	3e-25	505 - 564	100	60 / 60	plus	ABC14947
Harvest35	U35_21614	711	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_21614 711 Hv_44K_v2
GGGTACCGGCGCCCCTCCTACGGGGAGGGGCTGCAATGGTGGTAGGCGGAGAGGAGGTTA
TGAGCGTGTAGCTGCTTCATGGCGGAGACTGCCGGAGAGGGAGTGGCATCTCGCGTGGAG
CTTGGAGACGGCGGAGGAGAAGGACGTCGCCGTTGTTAGCGGGCCGACCGCAATGGCAAC
GCCGCCGCCGCCAGCGTTCGTGTACCGGATCAGCACGGGGGGCGAGTGGGCGGAGCTCCA
GCGCACCGGCGGCACCCTCGGCGGCGACCTCGACCGCTCCACCGGCTGCTTCCACCTCAG
CGACCTCGCCCAGGTGAAGATGACACTGAAGAATTATTTCCGTGGGCAAAATGATCTGTA
CCTGCTACAAATTGACACTGCCAAGATTGCAGATGGCTTAATTTATGAGGCAGCTGATGG
CTGTAACTATTTTCCTCATTTCTATGGCCCTGATCGGAGCTTTGCACCCCTTCAACTAAG
TGCTGTTGTCAAGGCAGACAAAATAGAGCTGACGAACAATGATTTTACTTGCAGTCTACT
TGATGGAGCACCCATCTAATTCTAATGTGTAACTGTAAGGTTTCACCCTTGGCCCTTGTT
TCCATAATTTCCTTGTAAGTTCCTTGCCAAATTTATTGAAGAGAGGTTGTCCACATGCTT
ATGCTAGTAATGGAAAGTACACAAATTTAATGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g36630.1	144	2e-64	protein\|expressed protein
Brachypodium v1_2	Bradi1g15300.2	129	3e-65
Arabidopsis v10	None