barSeed - Barley Seed Development Database

Probe CUST_4580_PI390587928

Source Contig U35_33607

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4580_PI390587928	Hv_44K_v2	AATGAAGGGTAGCCCGAAAGACACATGATGTACTAATGATTTAGCACAGTCGCGGCACAT	182	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249988.1	994	3e-21	840 - 896	98	56 / 57	plus	ABC02851 ABC02852
MLOC	AK360130	1301	3e-21	797 - 853	98	56 / 57	plus	ABC02851 ABC02852
Harvest21	ABC02852	1086	6e-22	812 - 868	98	56 / 57	plus	ABC02852
Harvest35	U35_33607	720	3e-25	183 - 242	100	60 / 60	minus
Harvest35	U35_38866	667	6e-22	262 - 318	98	56 / 57	minus
Harvest35	U35_15109	1107	6e-22	804 - 860	98	56 / 57	plus

Contig Sequence (720 bp)

>U35_33607 720 Hv_44K_v2
TACATTTACGGCCCCAGTAACGGCCATTATAGCTAAGCTTACAGTTCGCACATGACGGGA
TCAAGCCCATTAGTCCAAGCACCTCCGTCAGCAACAAATAAACAACCTTCCGCCAAACAA
GTTCTTCGGAAACAGTTAAGACAAGCAGACAAGCTGTGAACATAAATAGAGCTAGAGGAG
CCATGTGCCGCGACTGTGCTAAATCATTAGTACATCATGTGTCTTTCGGGCTACCCTTCA
TTGCAGCCTCAGCAGCAGCCTTCTCTGTTTCGATCTCAGCAACGTACTCATCGATCTCGT
CTTCCTCAAGTTGGCGAAGACCATCTTTGTGCGTCATCACAGCGATCTCAATGTTCTTGA
CACCACTCTCGACAACCTCAAGAAGGGAGCGGCCGCTCAACAATATAGCCTGTTATTTCT
GGGCCTGGCTGAAGATGACAGCCCACAGGAAGATGACAGCCCATTGTTGATTTACAGAGC
GGATAATTACAAGCACTATCAGTGTTACCATCACCTGCTGTCAGGTCAAAAAGCCTGCCT
GTCTCATGTAATGTTACGAATGCTACAGAAAAGATCATCTATCTTCTAACACAATGAGGT
TATCTATGTGTAGAGCTATGTATGTACAGGAACATGCTANGGTTCTAGCGTGTCTAGAGC
GCCTTCTGGTCCAGCCTCTCATTCCAGTTCAGGCACCTGATCAAGCTACGGAACCAGTCG

Homology of Contig U35_33607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None