barSeed - Barley Seed Development Database

Probe CUST_4553_PI390587928

Source Contig U35_38901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4553_PI390587928	Hv_44K_v2	ACTACGGACTAAATGCCGCACCCGTCGTCGTCATCGTCTTCCTCGGCCAATGTGGACGCG	88	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354984	2214	2e-24	161 - 220	100	60 / 60	plus	ABC16221
MLOC	MLOC_52918.1	1023	2e-24	512 - 571	100	60 / 60	minus	None
JLOC1	JLOC1_33946.1	841	8e-25	464 - 523	100	60 / 60	minus
Harvest21	ABC34875	620	3e-25	89 - 148	100	60 / 60	plus
Harvest35	U35_38901	620	3e-25	89 - 148	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_38901 620 Hv_44K_v2
GGCCTGCAGGCTCGACTCACCCCCACTTCACCCCGCCCGCGCGCACGGGGAGCTAGGCCG
TACAGTACGCGAGCCCGTGAGCGAGCAGACTACGGACTAAATGCCGCACCCGTCGTCGTC
ATCGTCTTCCTCGGCCAATGTGGACGCGGCCGCCAAGGGCGTCAAGCTCGAGCGGTACGC
CAGCGGCGGCGGCGCGCTGCTGATGCGGCGCGCGGGGAGCTCCAAGATCGTGGCGGCGTC
CTCGCACCTCCTTTTCCGCGCCACCGTCCTCGCCACGCTCGCGCTCGTCTGCCTCTTCGC
CGTGCACTACCCTACCCTCCTCTCCCGCTCCTTCCGGCTCTCCGCCGCCTCCTCCCCGCC
GCGGCCGACGTCACGGCACCGGAACCTGCTCGGGTCTTCGTCGGCGTACGCGGGCGCGGC
GTGGGAGCGTGAGGTGCGGCGGAGCGCCACGCCGCGGCGGGACGGAGGTATGTCGGTGCT
GGTCACGGGCGCCGCGGGGTTCGTGGGCGCGCACTGCGCGCTGGCGCTCAGGGCGCGCGG
CGACGGCGTGCTCGGCCTCGACAACTTCAACGCGTACTACGAACCGGCCCTGAAGCGCGC
GCGGCAGCGGCTGCTCGCGT

Homology of Contig U35_38901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None