barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_454_PI415269222Hv_44K_v2TCCATGACCCTGTGCGGGCCGATCAAGAAGCACATCATGGAGCACTTCCACCACAAGAAG460GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK253095.19847e-23490 - 5499859 / 60plus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOCMLOC_81380.17177e-2312 - 719859 / 60minus ABC00061 ABC00152 ABC00444 ABC00603 ABC00704 ABC00970
MLOCMLOC_35435.18267e-23763 - 8229859 / 60plus ABC00152 ABC00444 ABC00603 ABC00704 ABC00970
MLOCAK251674.110093e-21489 - 5489758 / 60plus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOCAK251384.110013e-21488 - 5479758 / 60plus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOCAK251031.111273e-21477 - 5369758 / 60plus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOCAK3590919493e-21479 - 5359856 / 57plus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOCMLOC_71561.110303e-21406 - 4659758 / 60minus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
JLOC1JLOC1_54137.18234e-23732 - 7919859 / 60plus
JLOC1JLOC1_22874.17344e-23671 - 7309859 / 60plus
JLOC1JLOC1_47574.112922e-21593 - 6529758 / 60plus
Harvest21ABC007187791e-23476 - 5359859 / 60plus
Harvest21ABC0044410581e-23472 - 5319859 / 60plusABC00444
Harvest21ABC467085666e-22282 - 3419758 / 60plus
Harvest21ABC320355556e-2218 - 779758 / 60plus
Harvest21ABC283336946e-22454 - 5139758 / 60plus
Harvest21ABC009707056e-22162 - 2219758 / 60plusABC00970
Harvest21ABC007047966e-22455 - 5119856 / 57plusABC00704
Harvest21ABC004498816e-22458 - 5179758 / 60plus
Harvest21ABC003298966e-22470 - 5299758 / 60plus
Harvest21ABC003275466e-22479 - 5389758 / 60minusABC00327
Harvest21ABC001529626e-22437 - 4969758 / 60plusABC00152
Harvest21ABC001339696e-22461 - 5209758 / 60plus
Harvest21ABC000616186e-2288 - 1479758 / 60plusABC00061
Harvest35U35_148989793e-25458 - 51710060 / 60plus
Harvest35U35_393046421e-23542 - 6019859 / 60minus
Harvest35U35_1489610221e-23472 - 5319859 / 60plus
Harvest35U35_148959851e-23483 - 5429859 / 60plus
Harvest35U35_1490310426e-22512 - 5719758 / 60plus
Harvest35U35_1490210116e-22488 - 5479758 / 60plus
Harvest35U35_149019596e-22441 - 5009758 / 60plus
Harvest35U35_149009316e-22455 - 5119856 / 57plus



Contig Sequence (661 bp)

>TA28559_4513 661 Hv_44K_v2
CAACAGCAATTGGTAGTAGTTCGATTCATTTCGTTGAGGCATGGCATNCCCNAGAGCAGT
CGTCCTCGGCCTCCTGCTGGCGATCGCCGTCGCCAACGCCGAGGCGGCCTCGGCGTCCGT
CGTGGTCGGCCTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATCAAGGCCGAGGAGGC
CTTCAAAGGTCTCCAGGTGGCGATCAAGTGCAAGAACGTCCAGGGCGAGTACGAGAGCAT
GGCGGTGGGCGGTCTCGACGGCACCGGTGCCTTCAGCGTGCCCCTCGCCGCTGACCTCCA
CGGCGCTGACTGCGTCGCGCAGCTCCACAGCGCTGCCGCCAACGCGCCGTGCCCTGGCCA
GGAGCCGTCCAAGATCGTGCCGGTTTCCGAGGGCACCACCTTCGGCATCGTTGCCGGCGA
CAAAATTGCCACGCCGTCTGCAGCGTCGCCGGAGTGCGCGTCCATGACCCTGTGCGGGCC
GATCAAGAAGCACATCATGGAGCACTTCCACCACAAGAAGCCCGTGCCGCCGAAGCCGGA
GCCCAAGCCCCAGCCCCACCCAGACTACGGCCCCGTGCCCAAGCCGGAGCCCAAGCCGCA
GCCTCACCCGGACTACCACCCCGTGCCCAAGCCGCAGCCCCACCCGGGACTAACANCCCG
T



Homology of Contig TA28559_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi5g04630.12038e-63
Arabidopsis v10None