barSeed - Barley Seed Development Database

Probe CUST_453_PI415269222

Source Contig TA28530_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_453_PI415269222	Hv_44K_v2	TGTGAGGGATAAGTATGTGTGTCAGGCAAATGTATGGGTGATTACGGGTCAGTCTTTTTT	861	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253095.1	984	2e-24	867 - 926	100	60 / 60	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOC	MLOC_39768.1	468	2e-24	141 - 200	100	60 / 60	plus	ABC00553
JLOC1	JLOC1_25952.1	495	8e-25	141 - 200	100	60 / 60	plus
Harvest21	ABC44357	413	3e-25	257 - 316	100	60 / 60	plus
Harvest21	ABC00553	507	3e-25	84 - 143	100	60 / 60	minus	ABC00553
Harvest35	U35_14898	979	3e-25	841 - 900	100	60 / 60	plus
Harvest35	U35_14895	985	3e-25	860 - 919	100	60 / 60	plus

Contig Sequence (984 bp)

>TA28530_4513 984 Hv_44K_v2
CGGCACGAGGCCACCGGCCACTTCACAACAGCAAGTGGCAGTAGTTCGATTCAGAGGTTG
AGGCATGGCAGCCCCGAGAGCAGTCGTCCTCGGCCTCCTGCTGGCGATCGCCGTCGCCAA
CGCCGAGGCGGCCTCGGCGTCCGTCGTCGTCGGCCTGGCCAAGTGCGCCGACTGCACCAG
GAAGAACATCAAGGCCGAGGAGGCCTTCAAAGGTCTCCAGGTGGCGATCAAGTGCAAGAA
CGTCCAGGGCGAGTACGAGAGCATGGCGGTGGGCGGTCTCGACGGCACCGGCGCCTTCAG
CGTGCCCCTCGCCGCTGACCTCCACGGCGCTGACTGCGTCGCGCAGCTCCACAGCGCTGC
CGCCAACGCGCCGTGCCCTGGCCAGGAGCCGTCCAAGATCGTGCCGGTTTCCGAGGGCAC
CACCTTCGGCATCGTTGCCGGCGACAAAATTGCCACGCCGTCTGCAGCGTCGCCGGAGTG
CGCGTCCATGACCCTGTGCGGGCCGATCAAGAAGCACATCATGGAGCACTTCCACCACAA
GAAGCCCGTGCCGCCGAAGCCGGAGCCCAAGCCCCAGCCCCACCCAGACTACGGCCCCGT
GCCCAAGCCGGAGCCCAAGCCGCAGCCTCACCCGGACTACCACCCCGTGCCCAAGCCGCA
GCCCCACCCGGACTACCACCCCGTCCCTCCCACGCCCACCTACGGCGGCGGCGGCGGCGG
TGGATACCACGGCCACCACTGACTCCGATCTACCGCCATCCGTCACAGCAATGAAACTTC
ATGTCTTGTTGCTGTCAGTGAGTGACGTTGCTATTTATGTGCACGAGTTAGCTTTGGTCT
TCTATCAGCCAGAGTAACAGTTGTGAGGGATAAGTATGTGTGTCAGGCAAATGTATGGGT
GATTACGGGTCAGTCTTTTTTTACAAAGTTTGTAATATCGGTGTGAATTTTTGTAATGAG
AAGTTCCTATATCTGAATCACCCC

Homology of Contig TA28530_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g04630.1	203	2e-61
Arabidopsis v10	None