barSeed - Barley Seed Development Database

Probe CUST_4513_PI390587928

Source Contig U35_26940

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4513_PI390587928	Hv_44K_v2	GAGTACATTTGCCTAAGGATGCATTTTCTGATTAGTCTCACAAATTAATGTTGCGGGTTA	641	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.517	0.968	1.539	1.998	1.115	0.754
Raw	3.688	14.090	21.209	46.029	7.694	5.811

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63721.1	2882	2e-24	938 - 997	100	60 / 60	plus	ABC15014
MLOC	MLOC_63721.2	3730	2e-24	938 - 997	100	60 / 60	plus	ABC15014
MLOC	MLOC_63721.6	2389	2e-24	797 - 856	100	60 / 60	plus	ABC15014
JLOC1	JLOC1_41770.4	3277	8e-25	820 - 879	100	60 / 60	plus
JLOC1	JLOC1_41770.3	2950	8e-25	820 - 879	100	60 / 60	plus
Harvest21	ABC52552	658	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_26940	704	3e-25	642 - 701	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_26940 704 Hv_44K_v2
CGGGATCGCAGGCGAGCGCGCGAGGGGTCGGGGAAGGGAAGAGGATGTCGCTGGGGGCGG
TGTTCCACGGCGCGCAGCTGTTGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGATGTTCG
CGCTCGGCCTCTTCGCCGTCGTCACCACCGTGCTCTGCTCCGCCGCCTTCCTCCACCACT
CCAAGCCCATCGCGTCGTAGCCGCGAGCCGCCTCCCGCCAAGTCCACGGCCCCCTCGGCG
CATCCTAATCGTAAGCCTGATTGATGTCAAGAATTTCATCGCTTCATTTCATTTCAATTC
AATTCCAAGGTTGGGCCGTCGACGACGAGGAACACTGGAATGCAGAGCGGCGGAATCGAT
TTGTTTTGCACTATGGTGGTGAATTTTGGATGGAATCAAAGAAACAATGTGCTCGCTCCG
CATGTTCATGCTTCCCGACTGGCTATGTGGATAGGCATGGACGATGCCACGATGGTTTTG
AGTAGGAGCACGTCCTCGTACTTGGAATCCATGGGATCGACATTCGGCACGATTCCCCTA
GCATTGTGTCTTGTGTTACATTACATCAGAGTCTGCACCATCTCCCCCGACCCTTGTCGC
CATAACATTTTTAGCATTTAGTACTGCAAATGTGCCATGTGGAGTACATTTGCCTAAGGA
TGCATTTTCTGATTAGTCTCACAAATTAATGTTGCGGGTTAGCT

Homology of Contig U35_26940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None