barSeed - Barley Seed Development Database

Probe CUST_4475_PI390587928

Source Contig U35_38938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4475_PI390587928	Hv_44K_v2	GGTTCAATGTTTGTATCTTTGCTTACGGGCAAACCGGTACTGGTAAAACATTTACAATGG	600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17022.1	2457	2e-24	1499 - 1558	100	60 / 60	minus	ABC04102 ABC11000
MLOC	MLOC_17022.2	2334	2e-24	1486 - 1545	100	60 / 60	minus	ABC04102 ABC11000
MLOC	MLOC_17022.3	2260	2e-24	1357 - 1416	100	60 / 60	minus	ABC04102 ABC11000
JLOC1	JLOC1_11761.1	2381	8e-25	817 - 876	100	60 / 60	plus
Harvest21	ABC34927	663	3e-25	601 - 660	100	60 / 60	plus
Harvest35	U35_38938	663	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_38938 663 Hv_44K_v2
GGGAGAACATGGAGTGCCGCGAGGCCCAGACGTCCCTGCGCGACCTGCAGATGGAGCTCA
TGCGCAAGTCCATGCACGTCGGCTCTCTCGCATTTGCGGTGGAAGGGCAAGTGAAGAAGA
AGACTCGTTGGTGCCAACTGCTGAAAGACCTCAGTGAGAAATTTAAGGCGTTGAAGACAG
AGCACCAGATTTTACTGAAAGAATCAGAGGACTACAAAAAGTGTTTGTCAGATGCTACGC
AGATGACTACAACAATTCATCAATATGTGAGCCAATATGCAAGTTTAGAATCTGAATTTA
AGGACCTGAAAGAGAAGTTCAGTGAGGAAGCAAAGGAACGCAAAGATCTTTACAACAAGC
TTATAGAGCTCAAAGGTAACATAAGAGTGTTCTGCCGCTGTCGGCCACTAAACACGGAAG
AAACAGCAGAAGGAGCCTCAATGGTGATAGACTTTGATTCCGCAAAAGATGGAGAGCTCA
TTGTTAGGGGCCATGTATCATTGAAGAAAGTCTTTAAATTCGATTCAGTCTTCAACCCTG
AAGAAGACCAAGAGAAAGTGTTTGAGAAGACTGCCCCATTTGCAACTTCGGTGTTGGATG
GGTTCAATGTTTGTATCTTTGCTTACGGGCAAACCGGTACTGGTAAAACATTTACAATGG
AAG

Homology of Contig U35_38938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42160.1	1005	1e-121	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g01580.1	982	6e-130
Arabidopsis v10	AT1G72250.2	1203	9e-79	Di-glucose binding protein with Kinesin motor domain \| chr1:27192902-27198118 FORWARD LENGTH=1203