- Probe CUST_4474_PI390587928
- Source Contig U35_38939
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4474_PI390587928 | Hv_44K_v2 | TTCTGGAACTGATTCCAACGGATCCCAGTTCTACATAACCACAATCAAGACAGGCTGGTT | 534 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360284 | 2097 | 2e-24 | 635 - 694 | 100 | 60 / 60 | plus | ABC04922 ABC16516 ABC22503 |
| MLOC | AK356033 | 1912 | 2e-24 | 672 - 731 | 100 | 60 / 60 | plus | ABC04922 ABC16516 ABC22503 |
| MLOC | MLOC_76966.4 | 1068 | 2e-24 | 442 - 501 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_76966.2 | 1030 | 2e-24 | 365 - 424 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_76966.5 | 999 | 2e-24 | 348 - 407 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_76966.8 | 1319 | 2e-24 | 547 - 606 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_76966.3 | 1234 | 2e-24 | 462 - 521 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_76966.6 | 1103 | 2e-24 | 345 - 404 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_50821.2 | 842 | 2e-24 | 134 - 193 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_50821.1 | 1218 | 2e-24 | 510 - 569 | 100 | 60 / 60 | minus | ABC16516 |
| MLOC | MLOC_76966.7 | 1213 | 6e-24 | 447 - 505 | 100 | 59 / 59 | minus | ABC16516 |
| JLOC1 | JLOC1_51331.4 | 1113 | 8e-25 | 607 - 666 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51331.3 | 1220 | 8e-25 | 714 - 773 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51331.2 | 2155 | 8e-25 | 714 - 773 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51331.1 | 1689 | 8e-25 | 248 - 307 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32410.1 | 1365 | 8e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34928 | 656 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16516 | 1102 | 3e-25 | 593 - 652 | 100 | 60 / 60 | plus | ABC16516 |
| Harvest35 | U35_38939 | 656 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20888 | 1158 | 3e-25 | 614 - 673 | 100 | 60 / 60 | plus |
Contig Sequence (656 bp)
>U35_38939 656 Hv_44K_v2 GGCTGCAGGCTCCCGGAGCACGGGGCAACCGGCGCCTCTCCTTACGGCATGGCTGCGCCG TCGTCATCCTCCACCCCCACCCCACCACTCTGTGCTGACCCGCTGCGCCGATCCGGGGGG ACAGCGCTCTCGCCGACGAGCGCGCAGTCGGCGGCGTCCTCTGCCCCGCGGCCCCCGTTG CGCGGCGCCAGGTCCTTCGGCTTCTTCTGCTGGCAACGCCCGGCGACGCACGCGCGTCGT GCAGCGCGAGGACAACCTAAGGAAGCCGTGCTAGCCCGGATGGTCGGAGATCGGGCAGGA ACGGAGGATTGGATCTTACCTTCTCACGGTCGGCTCCCCTCCCTCCCTCCGCGTCCTGCA TCGGCAAACCTGTTGGATTGGTGTTGTCGGTGAAGTTCGTTCCTGGAGATCTCAAAGGCT AAACCAACGGTGTAGATATGACCCTCGAGTGGAACCATGTCCCAAAAATCCGCGTCCCTC TTCGATGTGCTTATTTTGGACAATAAGATAATCTGGTGTTGTTGCTATGGCAAATTCTGG AACTGATTCCAACGGATCCCAGTTCTACATAACCACAATCAAGACAGGCTGGTTGGACGG NGAGCATGTAGTCTTTGGCAGGGTGATTCAGGGAATGGATTATGTGTACGCCATCG
Homology of Contig U35_38939 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |