barSeed - Barley Seed Development Database

Probe CUST_4469_PI390587928

Source Contig U35_14984

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4469_PI390587928	Hv_44K_v2	CTTTGTGTGCATAGGGAGTTAAGAGAGTTTAGAGTTGTGAATGTGCCGATTGCCTTTTTT	1432	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366942	1617	2e-24	1447 - 1506	100	60 / 60	plus	ABC08343
MLOC	MLOC_66259.4	1186	2e-24	862 - 921	100	60 / 60	plus	ABC08343
MLOC	MLOC_66259.3	1334	2e-24	1010 - 1069	100	60 / 60	plus	ABC08343
JLOC1	JLOC1_43644.3	1513	8e-25	727 - 786	100	60 / 60	plus
JLOC1	JLOC1_43644.2	1512	8e-25	726 - 785	100	60 / 60	plus
JLOC1	JLOC1_43644.1	2161	8e-25	1375 - 1434	100	60 / 60	plus
Harvest21	ABC08343	1625	3e-25	1433 - 1492	100	60 / 60	plus	ABC08343
Harvest35	U35_14984	1625	3e-25	1433 - 1492	100	60 / 60	plus

Contig Sequence (1625 bp)

>U35_14984 1625 Hv_44K_v2
TCAGCCCCCTCCACCTCCCCTGGATCCGATTCAGCAGACTCGCCACCTGTTTTCGTCCCC
GCAGCCTTCTCCTGAGGTTTTGTCCCCACAGCCCACACTCTTCCCATTTCTCGCGTCTCC
TCCTCAGAGCAGAAGCCCGAGCCGCCACGCCTCTCGATCCGCGAACCTCCCCCCTCAAAG
CCCCCCCGCGGATCTGCTGGTTTCGGGAGGCGTCCCGGCGGGCGCGTAGGGTCGGGGCCT
CGGGCTGTTTCGGGAGAGGAGGGGAGGCGCATGAGGATTCGCGAGCTGGGGGACGGCGAC
GGGAGGCCGGTGGAGGGGGAGGAGCAGGAGGAGGCCTGCGCCGGTGGCGGGGGCGGAGAG
GTCGTGCGGCTGAGGGCCAAGCGCGCGCTCGTCGGCGCCGGGGCCAGGGTGCTCTTCTAC
CCGACGCTCCTCTACAACGTCCTGCGCAACCAATTCGAGGCCGAGTTCCGGTGGTGGGAC
CGCGTCGACCAGTGTATTTTGCTAGGAGCCGTTCCTTTCCCAAGTGATGTTCCACGTTTG
AAGCAACTTGGAGTTCAGGGAGTTGTAACATTGAATGAGCCTTATGAGACTCTGGTGCCA
ATGTCCTTGTACCAGGCCCATGGGATTGATCACCTTGTGATTGCCACAAGAGACTACCTC
TTCGCACCATCCCTCGAAGATATTTGTCAAGCCATCGATTTTATCCACCGTAATGCTTCA
CACGGTGGTACTACTTATGTTCACTGTAAAGCTGGAAGAGGACGAAGCACCACTATTGTT
TTGTGCTATTTGATCAAATATAGGAACATGACTCCTGAAGCAGCTTTGGATCATGTACGA
TCCATTAGGCCCCGAGTGCTTTTGGCACCATCACAGTGGCAGGCTGTTATCGTATTTAGC
ACTCTCACCACTGGACGTCTTCCAGTACAGAGTACGAATCGAAACTGTTATCTAGAAGGC
ACCAAAGCCTCCATCCCTGACAGAGATATCGAGGACTGCACTATGGAGTTTGATTACGAT
GACAGCGGTTTACCTCTTTGTCAAGTTATGGTACCGAGGCCAAGCAGTCCAACTGGATGT
GTCGATGCAGTTTTCATAACAGAAGCAGATCTGGAGGGCTACGATGCATACATTGATACT
GGGAAGGATGTTGTGTCATTTGAAGTAGTAGCCAGTCGCAAGCCCATCATGAGGAGACTA
TCATGCCTCTTTGGATCGTTGAAAGTTACCAGCAACTGTGAACCAGCCCCAAGCAGGTTT
ACTGAGGTTCGTGCCTGCTAGGTAGGCCTGATACTAGCTTTACCCAATTTTCTCCATGTT
GTGAGTCTGAGATACATGATACTCCATTAGTAGATAGGCAGGCAGTCAGCCAGTCAGGCA
TCGTGGAAACATGGAGGTTTCTACAGCCAAGGCAAACGCCACCGGGAAGAAGCTTTGTGT
GCATAGGGAGTTAAGAGAGTTTAGAGTTGTGAATGTGCCGATTGCCTTTTTTTCAGTCGA
AAACATGTGGTTTGATTTCACCATTGTTCTTTTTGGAATAAAAAAATTATCATGTTCGGT
CAGTATTTTTGCTAGTTCCTGTCTTTTGGAATAAAACTTTGTTAACTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_14984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53710.1	342	0.0	protein\|dual specificity protein phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g49300.1	333	0.0
Arabidopsis v10	AT2G35680.1	337	4e-94	Phosphotyrosine protein phosphatases superfamily protein \| chr2:14997004-14998590 REVERSE LENGTH=337