barSeed - Barley Seed Development Database

Probe ABC08343

Source Contig ABC08343

barSeed

Links

Affymetrix Source Sequence (1625 bp)

>ABC08343 1625
TCAGCCCCCTCCACCTCCCCTGGATCCGATTCAGCAGACTCGCCACCTGTTTTCGTCCCC
GCAGCCTTCTCCTGAGGTTTTGTCCCCACAGCCCACACTCTTCCCATTTCTCGCGTCTCC
TCCTCAGAGCAGAAGCCCGAGCCGCCACGCCTCTCGATCCGCGAACCTCCCCCCTCAAAG
CCCCCCCGCGGATCTGCTGGTTTCGGGAGGCGTCCCGGCGGGCGCGTAGGGTCGGGGCCT
CGGGCTGTTTCGGGAGAGGAGGGGAGGCGCATGAGGATTCGCGAGCTGGGGGACGGCGAC
GGGAGGCCGGTGGAGGGGGAGGAGCAGGAGGAGGCCTGCGCCGGTGGCGGGGGCGGAGAG
GTCGTGCGGCTGAGGGCCAAGCGCGCGCTCGTCGGCGCCGGGGCCAGGGTGCTCTTCTAC
CCGACGCTCCTCTACAACGTCCTGCGCAACCAATTCGAGGCCGAGTTCCGGTGGTGGGAC
CGCGTCGACCAGTGTATTTTGCTAGGAGCCGTTCCTTTCCCAAGTGATGTTCCACGTTTG
AAGCAACTTGGAGTTCAGGGAGTTGTAACATTGAATGAGCCTTATGAGACTCTGGTGCCA
ATGTCCTTGTACCAGGCCCATGGGATTGATCACCTTGTGATTGCCACAAGAGACTACCTC
TTCGCACCATCCCTCGAAGATATTTGTCAAGCCATCGATTTTATCCACCGTAATGCTTCA
CACGGTGGTACTACTTATGTTCACTGTAAAGCTGGAAGAGGACGAAGCACCACTATTGTT
TTGTGCTATTTGATCAAATATAGGAACATGACTCCTGAAGCAGCTTTGGATCATGTACGA
TCCATTAGGCCCCGAGTGCTTTTGGCACCATCACAGTGGCAGGCTGTTATCGTATTTAGC
ACTCTCACCACTGGACGTCTTCCAGTACAGAGTACGAATCGAAACTGTTATCTAGAAGGC
ACCAAAGCCTCCATCCCTGACAGAGATATCGAGGACTGCACTATGGAGTTTGATTACGAT
GACAGCGGTTTACCTCTTTGTCAAGTTATGGTACCGAGGCCAAGCAGTCCAACTGGATGT
GTCGATGCAGTTTTCATAACAGAAGCAGATCTGGAGGGCTACGATGCATACATTGATACT
GGGAAGGATGTTGTGTCATTTGAAGTAGTAGCCAGTCGCAAGCCCATCATGAGGAGACTA
TCATGCCTCTTTGGATCGTTGAAAGTTACCAGCAACTGTGAACCAGCCCCAAGCAGGTTT
ACTGAGGTTCGTGCCTGCTAGGTAGGCCTGATACTAGCTTTACCCAATTTTCTCCATGTT
GTGAGTCTGAGATACATGATACTCCATTAGTAGATAGGCAGGCAGTCAGCCAGTCAGGCA
TCGTGGAAACATGGAGGTTTCTACAGCCAAGGCAAACGCCACCGGGAAGAAGCTTTGTGT
GCATAGGGAGTTAAGAGAGTTTAGAGTTGTGAATGTGCCGATTGCCTTTTTTTCAGTCGA
AAACATGTGGTTTGATTTCACCATTGTTCTTTTTGGAATAAAAAAATTATCATGTTCGGT
CAGTATTTCTGCTAGTTCCTGTCTTTTGGAATAAAACTTTGTTAACTTAAAAAAAAAAAA
AAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366942	1617	0.0	15 - 1617	99	1602 / 1603	CUST_4469_PI390587928 CUST_17161_PI390587928	ABC08343
MLOC_66259.4	1186	0.0	139 - 1038	100	900 / 900	CUST_4469_PI390587928 CUST_17161_PI390587928	ABC08343
MLOC_66259.3	1334	3e-86	188 - 361	100	174 / 174	CUST_4469_PI390587928 CUST_17161_PI390587928	ABC08343
MLOC_66259.1	1364	0.0	652 - 1364	100	713 / 713	CUST_17161_PI390587928	ABC08343
MLOC_66259.6	690	0.0	1 - 690	99	687 / 690	CUST_17161_PI390587928	ABC08343
MLOC_66259.5	579	0.0	2 - 579	99	577 / 578	None	ABC08343
MLOC_31958.1	925	0.0	342 - 833	100	492 / 492	None	ABC08343
MLOC_31958.2	406	0.0	1 - 369	99	368 / 369	None	ABC08343
MLOC_31958.3	440	2e-107	213 - 424	100	212 / 212	None	ABC08343
AK357534	1893	1e-104	234 - 452	98	215 / 219	CUST_24539_PI390587928	ABC08343 ABC20979 ABC44638
MLOC_77315.1	208	8e-77	1 - 184	95	176 / 185	None	ABC08343
AK374689	945	3e-76	2 - 184	95	175 / 184	None	ABC07957 ABC08343
MLOC_77315.2	219	8e-72	1 - 175	95	167 / 176	None	ABC08343