barSeed - Barley Seed Development Database

Probe CUST_443_PI415269222

Source Contig TA38859_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_443_PI415269222	Hv_44K_v2	ATCTTCTTCTTCTTCCGATGCTCTCTTGCTGCTCCATTTTGTTTGCCCCGTTGTAAAAAA	1178	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361986	1197	2e-24	1118 - 1177	100	60 / 60	plus	ABC09250 ABC09252 ABC14337 ABC53019
MLOC	MLOC_23224.1	948	2e-24	34 - 93	100	60 / 60	minus	ABC09252
JLOC1	JLOC1_16061.1	1048	8e-25	839 - 898	100	60 / 60	plus
Harvest21	ABC09252	1292	3e-25	1186 - 1245	100	60 / 60	plus	ABC09252
Harvest35	U35_46692	530	3e-25	74 - 133	100	60 / 60	minus
Harvest35	U35_2500	1640	3e-25	1184 - 1243	100	60 / 60	plus

Contig Sequence (1268 bp)

>TA38859_4513 1268 Hv_44K_v2
CCGCAAACAAAATGGAGCAGCAAGAGAGCATCGGAAGAAGAAGAAGATCTTGCCGAAACA
GGGCACCGCCGGCAAGATCATCATTCTTTCTCCTTCCTGCATCTCTCTCTCTTCCACTCC
TGCAAACCCCAACCCAACCCAACCCAACCCACCACCTGAGAAGCACGAGGGAAGAAAGAG
GACGGTGTCATCGGCGGCGGACCATCTAAAGCGATGGGGAGGTCGCCGTGCTGCGAGAAG
GCGCACACCAACAAGGGCGCCTGGACCAAGGAGGAGGACGACCGACTCACCGCCTACATC
AAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTGCCCAAGGCCGCCGGCCTGCTCCGCTGC
GGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAAC
TTCAGCCACGAGGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAATGG
TCCCTGATAGCCGGGAGACTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAAC
ACGCACATCCGGAGGAAGCTGACGAGCCGGGGGATCGACCCGGTGACCCACCGCGCGATC
AACAGCGACCACGCCGCGTCCAACATCACCATATCCTTTGAGTCGGCGCAGAGGGACGAC
AAGGGCGCCGTGTTCCGGCGAGACGCCGAGCCCGCCAAGGCAGCAGCAGCGGCAGCGGCG
ATCTCACACCACGTGGACCACCATCACCGTAGTAACCCCCAGCTTGACTGGGGCCAGGGG
AAGCCGCTCAAGTGCCCGGACCTGAACCTGGACCTGTGCATCAGCCCCCCGATCCACGAG
GACCCCATGGTGGACACCAAGCCCGTGGTGAAGAGGGAGGCCGGCGTCGGCGTCGGCGTG
GTGGGCCTCTGCTTCAGCTGCAGCATGGGGCTCCCCAGGAGCTCGGACTGCAAGTGCAGC
AGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAAGCATCGAGATGAAATGAGCA
TAGCAGAGCACCCCCTCTCTGCTCTGCTCTTCTCTCCCCTGTCTGTGACGTGGAGATATT
GGTTTAGCCTGTAGGTGAAAATACAGCGAGCGAAAGAGAGAGAGATGCAGGAAGGAGAAA
GAATGATGATCTTGCCGGCGGTGCCCTGTTTCGGCAAGATCTTCTTCTTCTTCCGATGCT
CTCTTGCTGCTCCATTTTGTTTGCCCCGTTGTAAAAAAAGAAAAATTACCGTTTGACTAA
TCATGAGC

Homology of Contig TA38859_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36730.1	252	1e-139	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g36460.1	240	9e-143
Arabidopsis v10	AT4G38620.1	282	4e-93	\| Symbols: ATMYB4, MYB4 \| myb domain protein 4 \| chr4:18053866-18054876 FORWARD LENGTH=282