barSeed - Barley Seed Development Database

Probe CUST_4425_PI390587928

Source Contig U35_37669

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4425_PI390587928	Hv_44K_v2	CTGTTGTGCCATGGTGATTTATGTATAACCGAAATTCGGAATGAACTCAAAGTTGGCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250890.1	956	2e-23	852 - 909	100	58 / 58	plus	ABC20148
MLOC	MLOC_15668.4	1390	2e-23	898 - 955	100	58 / 58	plus	ABC16646 ABC20148
MLOC	MLOC_15669.2	977	2e-23	314 - 371	100	58 / 58	plus	ABC20148
MLOC	MLOC_15668.1	3086	2e-23	826 - 883	100	58 / 58	plus	ABC20148
MLOC	MLOC_15668.3	1253	2e-23	736 - 793	100	58 / 58	plus	ABC20148
MLOC	MLOC_15668.2	3620	2e-23	1360 - 1417	100	58 / 58	plus	ABC16646 ABC20148
MLOC	MLOC_15669.1	1238	2e-23	369 - 426	100	58 / 58	plus	ABC20148
JLOC1	JLOC1_10758.2	1113	1e-23	890 - 947	100	58 / 58	plus
JLOC1	JLOC1_10758.1	949	1e-23	471 - 528	100	58 / 58	plus
Harvest21	ABC20148	638	4e-24	545 - 602	100	58 / 58	plus	ABC20148
Harvest35	U35_37669	663	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_27453	814	4e-24	708 - 765	100	58 / 58	plus
Harvest35	U35_9226	638	4e-24	545 - 602	100	58 / 58	plus

Contig Sequence (663 bp)

>U35_37669 663 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCCAACTTTGAGTTCATTCCGAATTTCGGTTATACATAAATCA
CCATGGCACAACAGGGCATAACAAATACTTATACTCCCTTCGTCCGAAAAAGAATATCCA
AGACTTAGTTCATTTGTTGTTTTGCAAAAACAACCTTGTGATTTAAAATCCCCTGCTAAT
CAATCCTCCTCTGCTTCTTCCTCCTTTCCCCCAAGTACCCCGGAAACCACTGCTCCTTCC
CCGCCACCGCCCATTCTGGTGCTAGAGTTTGGCTAGTCCCTAGTCGCCGCTGTTCCTAGC
CCGCCGACAGAGCACCATGGCCCCAATCGAGGGCTGCTTCCTCGCCGCCACTTCAAAGAA
ACTGGGAAGAAAAAGGGCCTCTAAAAGTGAGAAGTTCCTGGTTACTTTTTTCTTGATTTC
TAATGACATATTTATGAAAGTTCTCTCCACATTGATGGATCCTTAGCATAATTCGCAAGA
AAATTCATTCCTAATGATTCTACAAATGCCTGAAATTAATCATAGATACTTTAGTTACTT
CATAATTGTATTTGAATAGAANAGATCAGAATTACATTAGGAAGAAGGGATCCAGAACAA
AGAAGCATGCCGATCTTTCACGAACGAAACAAGCTCTCTTTGTATGTGTGGCAATTAGCG
ACA

Homology of Contig U35_37669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None