barSeed - Barley Seed Development Database

Probe ABC16646

Source Contig ABC16646

barSeed

Links

Affymetrix Source Sequence (1534 bp)

>ABC16646 1534
GTTCGTGGACTCGGCGACGGGGGAGCGGGAGCGAGGGGACTCGGCGGCGCGGTGAACGAG
AAGGAGGCAACCAGGAGACCGACGCCAAGCCGACGACCAGGGCGGACACCAGCTCAATCT
CCGGTCATTTCTTCCTCTGGCTTTGAACAACCTTGCGAGTGTTTATGTGGATTGCGGGAA
TCTAGACTTGGCAGCTGAATGCTACATTAATGCGCAGCTTGCAGCTTGCTCGCGAGCATG
CAACAAGCCAGCATGAATGACTTGTTTATGAAGGATGGATACTGTATGATACTGGCCACT
GCGAGGAAGGATTGCAGAAAGCGGAAGCATTCATTGCCATACAGAGATCATTTGAGGCGT
TCTTTCTAAAAGCTTATGCTTTAGCTGATTCGAGCCTCGAGCCGTCAACCTCAGCAACAG
TCGTATCGCTTCTTGAAGATGCATTACGGTGCCCCTCAGATAGACTTAGGAAGGGCCAGC
ACAACTTGATCCAAGTTTATATAAATGCTGAAATGAGTGCTCTGGAGCAATCGATTCACA
AGTATGGAGAGGACACACAGTAGTGGCATCGACCCAGATCCGGAGTCAAGCAGGTGAGCA
CACACAGTGAAGGTGTTGTTCCATCTCTCTGATGGCTCCTGGACATATTGTCGGCGGCCT
AGCAGATCGGAGCTCATCGGCAACGAAGCTCCGCCCAGAAGTGTGCTTCTCGCAGCAGCC
CCCCTACGGCGATACGGAGTGGGAAGGTCGAATGAACGTGGGTATGTCAAATTCGGTAGC
GACTGCAATCAGGGACAGCATAAGGGATACATCAATTGGCAAAATAAGGAACCATGAGAA
GGCCGATCGTGCTACGGTGGAACAGGCCATTGACCCAAGGACACGCATGGTTTTGTTCAA
GATGTTGAATAGTGGTGTTTTTAATAATATAAGTGGCTGCATTTCTACAGAAAAAGAGGG
AAATGTCTATCATGCAACAAAAATAGATGGCCAGGAGCTAGCAATCAAAGTCTATAAAAC
CTCTGTCCTTGTCTTTAAGGATAGAGACAGATATGTTCAAGGAGATTATCGTTTTAGATA
TGGTTACTGCAAGCATAATCCCCGGAAAATGGTTAAAACCTGGGCTGAAAAGGAAATGAG
AAATCTTAAACAGTGGGATATAATTTTCATACCTTATTCATAATTTCATATTGCTGTTAT
TAAAATATCTATGATTAATTTCAGGCATTTGTAGAATCATTAGGAATGAATTTTCTTGCG
AATTATGCTAAGGAATCCATCAATGTGGAGAGAACTTTTAATGTGGAGAGAACTTTCTTA
AATATGTCATCAGAAATCAAGAAAAAAGTAACCAGGAACTTCACACTTTTAGAGGCCCTT
TTTCTTCTCAGTTTCTCTGAAGTGGCGGCGGGGAAGCGGCCCTCGATCGGGGCCATGGTC
CTCTCTCGGCGGGCAAGGAACAACGGCGGCCAGGGACTTGCCCAACTCCCGCACCGGAAT
ACATGAAAATTTAAACTTTCAATAAATTTATCAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK361670	2656	0.0	1 - 395	100	395 / 395	CUST_18803_PI390587928	ABC01650 ABC14788 ABC16646 ABC48380
MLOC_32152.2	524	0.0	34 - 524	93	475 / 511	None	ABC16646 ABC38406
MLOC_49029.1	355	6e-123	43 - 307	97	257 / 265	None	ABC16646
MLOC_27353.1	448	2e-112	1 - 221	100	221 / 221	None	ABC14788 ABC16646
MLOC_32152.1	737	4e-70	581 - 737	97	153 / 157	CUST_13533_PI390587928	ABC16646 ABC38406
MLOC_27348.1	260	2e-92	67 - 257	99	189 / 191	None	ABC16646
MLOC_28874.1	248	1e-90	39 - 235	97	192 / 197	None	ABC16646
MLOC_15668.4	1390	2e-87	439 - 719	87	262 / 300	CUST_4425_PI390587928 CUST_5898_PI390587928	ABC16646 ABC20148
MLOC_15668.2	3620	2e-87	901 - 1181	87	262 / 300	CUST_4425_PI390587928 CUST_5898_PI390587928	ABC16646 ABC20148
MLOC_2672.1	315	8e-77	1 - 157	100	157 / 157	None	ABC16646
MLOC_47120.1	274	4e-55	151 - 274	98	122 / 124	None	ABC16646