barSeed - Barley Seed Development Database

Probe CUST_4409_PI390587928

Source Contig U35_25698

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4409_PI390587928	Hv_44K_v2	TTCATTGCCCACCGTAGATAACTTTTCGGTTCAGGATTGTATCTCCCTATTTTCTGCTAT	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60115.1	1445	2e-24	113 - 172	100	60 / 60	minus	ABC08979 ABC11338 ABC24449
JLOC1	JLOC1_39171.1	1575	8e-25	1362 - 1421	100	60 / 60	plus
Harvest21	ABC24449	409	3e-25	350 - 409	100	60 / 60	plus	ABC24449
Harvest35	U35_25698	409	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_25698 409 Hv_44K_v2
AAAGAAGACATACCCTGACTACAACTACGTAAAATGCAAGGCCGATGCGCATCACAACTC
TCCTGTCACGCCGATTTCGTCGGCAAAATTGAGTAATCTGGGCTGGAAGCCGAGGGCATT
GGAGGAGACGCTCCTGGACAGCATCGAATACTACCGGAAGACAGGAATTCTGCAGGATGT
GGAGGGACAGACCTACCGCCTTCCTGATATTTTCCGCCATTTTCAAGCTGCCGACTAATG
AGTGGAGGGTGGCAGTGGCCGGTGCTTTCTACATAGGTCATTGTGCTTGCGACTTGCTGA
ATGTTTTCAATCTCAAGGGCAGATGATAGGAGACCAGAGAGTGAACCTGTTCATTGCCCA
CCGTAGATAACTTTTCGGTTCAGGATTGTATCTCCCTATTTTCTGCTAT

Homology of Contig U35_25698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None