barSeed - Barley Seed Development Database

Probe CUST_4356_PI390587928

Source Contig U35_49686

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4356_PI390587928	Hv_44K_v2	TTCGACCTGTTCCAGTCGCCTGCAGCCAACTGGCGCGACACCCTGTTCATCGAGATGTCG	188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55350.1	1962	2e-24	1261 - 1320	100	60 / 60	minus	ABC13312 ABC41288
JLOC1	JLOC1_35690.1	1387	8e-25	832 - 891	100	60 / 60	minus
Harvest21	ABC51546	387	3e-25	189 - 248	100	60 / 60	plus
Harvest35	U35_49686	387	3e-25	189 - 248	100	60 / 60	plus

Contig Sequence (387 bp)

>U35_49686 387 Hv_44K_v2
CGTTGGTCGGCGCGGTGAAGGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACC
ACGGCGTGCCGGAGGCGGCCATGTCGGCGATGCTCGCGGCGCTGCGGAACTTCATGGAGG
AGCCGGCGGAGGCCAAGGCGCCGTACTACACCCGGGAGCCCGGCCGGCGCGTGAAGTACC
AGAGCAACTTCGACCTGTTCCAGTCGCCTGCAGCCAACTGGCGCGACACCCTGTTCATCG
AGATGTCGCCGGAGCCGCCGGCGCCCGAGGAGATCCCGCAAGCGTGCAGAGCCATCGCGC
CGGAGTTTGCGGCGCTGGTGCGGCGGCTGGGGAGCACACTGTTTCGGCTGCTGTCAGAGG
CGATGGGCCTCCGACAGGGGCACCTGG

Homology of Contig U35_49686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None