barSeed - Barley Seed Development Database

Probe CUST_4317_PI390587928

Source Contig U35_4276

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4317_PI390587928	Hv_44K_v2	GATGAACTTGGTTTCTTCCGTTGCTGTCATCATCTGTAAAGTATCCGGTTTGTGAAAAAA	1600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6706.1	2595	3e-22	1204 - 1259	100	56 / 56	minus	ABC09130 ABC09131
JLOC1	JLOC1_4380.1	2645	1e-22	1336 - 1391	100	56 / 56	plus
Harvest21	ABC09131	1671	3e-25	1601 - 1660	100	60 / 60	plus	ABC09131
Harvest35	U35_4276	1671	3e-25	1601 - 1660	100	60 / 60	plus

Contig Sequence (1671 bp)

>U35_4276 1671 Hv_44K_v2
GCGGGGCTGGCGATGACGCCCGGCGGAGGCGACGAGGAGAGGGACCTCACCATCAGCGGG
CTCGCCACGTACCAGCCATATGACGGGATACTTGCCTTGAAGATGGCTCTTGCTGGATTT
ATGAGGCAAATCATGCAAGAGTCGGTATCCTTTGATCCATCTCAAATGGTGATAACATCT
GGTGCGACGCCTGCAATGGAAATACTGAGCTTCTGTATTGCTGATCCAGGAAATGCATTT
CTTGTTCCGTCACCATACTACCCTGGATGGGACAGGGACATAAAATGGCGAACTGGTATT
GAGTTGATACCCGTTCCTTGCCGGAGCACCGACAACTTCAACATCAGTATCACTGCTCTA
GAAATAGCCTATAACCAGGCAAAGAAGCGAGGAGTAAGGGTTCGTGGGGTTCTCATATCT
AATCCTTCCAACCCTACAGGAAGCTTTGTGCCCAAGCAAACACTGAGTGATCTTCTGGAC
TTTGCTACAGAGAAGAACATACACTTAATTTCTGATGAAGTGTTTGCCGGTTCAACATTT
GGAAGTGGTGAATTTGTCAGCGTGGCAGAGGTTGTGAACGAGCTAGAAGACTTTGACAGA
GGCAGGGTTCACATAATCTACGGTCTCTCAAAAGACCTATCTCTGGCAGGGTTTCGGGTT
GGAGTCATATATTCGTACAATGAAAGCATCGTGGAGGCAGCCGCTAAGATTGCTAGATTC
TCATCCGTGTCAACCCCGACCCAGCGCCTGCTTGTTGCCATGCTTTCAGACCAGAAGTTT
ATCTCGAATTACCTGAAAGTTAACAGAGAGAGGCTGCACAAGGCGTACAATTTGCTCGTT
GATGCTTTGAAACAGGTGGGCGTCGAGTGCTTCAAGAGCAGCGGAGGATTCTACTGCTGG
GCGGATATGAGCAAGTTCATCCGGTCTTACAGCGAGAAAGGGGAACGCAGGCTTTGGGAC
AGGCTGTTGGAGGAGGCGAAGGTCAATGTCACCCCAGGTTCATCTTGCCATTGCATTGAG
CCTGGATGGTTTAGGTGCTGTTTCACAACGTTGAGGGAGCAGGATATTCCTGTGGTGGTG
GAGAGGCTCAGGAGAGTCACAGATGGCCACAAATCAAACCGTTGAGATGTCCAAAGTACT
CTTTTTGGCCTGTAGGGTGTCGAAAAATAACTGCTTCGCCAGGTGCTTCACAAGAAACGC
AGAAGCACACAGGAAAAAAAATGCCTTAACCTGATCTGTTCCGAACTCCGATCAGAGAAT
TTCCATCTTGGCATCTACCATCGGGGGAGTTTTGAAGCTGGCAGTTGGTGGAAGCAGTGG
CGCATGTCTTCGGTGGTGGAACGAAGAACAGGGATCATGTTCATATTGGTCATGCCCCCT
CCGTTCCTCCGCTCCTGTTGAATCCAAGCGTGGTAGCTCTTTGGAAGGTTGTAAATTGTT
GATCCTCGTCTGCTTCTCTCGTAGGTGTCGCATGCGGTAAATTGCCCGTCTCATGATAGT
CCGAGTCAAAAATCAGTGTGTTCATTCACCTATTCGCTCCTGTTACCCTTCTTCCTCTCT
CTCCTGGCAATTTTGTTCTTTGGTAACATAAATTAGAGTCGATGAACTTGGTTTCTTCCG
TTGCTGTCATCATCTGTAAAGTATCCGGTTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03990.1	543	0.0	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi1g49966.1	379	0.0
Arabidopsis v10	AT5G51690.1	495	1e-154	\| Symbols: ACS12 \| 1-amino-cyclopropane-1-carboxylate synthase 12 \| chr5:20999015-21000957 REVERSE LENGTH=495