barSeed - Barley Seed Development Database

Probe CUST_430_PI415269222

Source Contig TA41390_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_430_PI415269222	Hv_44K_v2	TTAGTACCATCAGGCAGCGCTACAGCTAGATTAGAAGAATCGCAATGAAATACGCTCCCT	1391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16458.1	1443	2e-24	75 - 134	100	60 / 60	minus	ABC02384 ABC43764
JLOC1	JLOC1_11329.1	1397	8e-25	1264 - 1323	100	60 / 60	plus
Harvest21	ABC02384	1471	3e-25	1392 - 1451	100	60 / 60	plus	ABC02384
Harvest35	U35_932	1523	3e-25	1392 - 1451	100	60 / 60	plus

Contig Sequence (1454 bp)

>TA41390_4513 1454 Hv_44K_v2
GCATCTAGGTGACCTCACCGCTACAGTGCACTGGTGGCGGCGGCGGGCAGGGGAGGGAAG
ATGGCACCGCCGCGGCGCGTGTGCGTCACCGGCGGAGGCGGGTTCATCGCCTCGTGGCTC
GTCAAGCTGCTCCTCTCCCGCGGCTACGCCGTCAACGCCACCGTCCGCGACCCAAGTGAC
CCCAAGAGTGTCCACCTCAAGCAGATGGACGAGGCCCGGGAGAATCTGCACTTGTTCAGG
GCCGACGTGCTCGACTACGACACGCTGACACGTGCGTTTGAGGGGTGTGAGGGGGTCTTC
CACCTCGCCACTCCGGTGCCTGAAGATAAGATTGGTGATCCTGAGTCAGAAGTATTGGCT
CCTGCTGGGAAAGGTACTTCAAATGTGCTAAAGGCTTGCTCGGCTATGAAGGTTCAGAAG
GTTATTGTCTTGTCATCCACTGCTGCAGTTGATTTCAACCCGAATTGGCCTCAAGATAAA
CTTAAAGATGAGAGTTGCTGGTCAGACAAAGACTTCTGCCAGAAGAACGAGGACTGGTAT
TCTGTTGCTAAGATTGTGGCCGAACAGGCATCCTTTGAATATTCGGAGAAGAATGGATTA
AATGTTGTTACGGTTTGCCCTCCTTTGGTTTTTGGTCCATTGTTGCAGCCTACTGTGAAT
ACAAGTAGCAAATTCTTAATCTACGTTACTAACGGAGGCCCTGACGTGATGAGCAACAAG
CTGTGGCACATTGTAGACGTCCGCGATGTGGCTGACGCCTTGCTGCTTGTGTACGAGAAG
GCAGAATCGTATGGGAGATACATCTGCACGCCGAACAACATCTGCACAACGGACTTGGTG
GACTTGCTGAAGAAGATGCACCCACAGTACAGCTATGTGAACAACATCGTCGACGTGGAC
CGTAAGGCGCCGATATCGTCGCAGAAGCTGAAGGATCTGGGGTGGAAGCCGCGGAAGCTG
GAGGAGACGCTCTCGGACAGCGTGGACTGTTATGAGAAGGCTGGACTTCTGCAGGGTTCC
GCTGCGCGTCCTTGCCGGCTTCCGCATCTGTTCCGTCTGGCTGGTGATCAGTGAATCAGA
AGTGCTGACGGTGCTTCGTTTTTTATGGTCGGACTTCTGGATGGAGTCTCGCAACGGCAA
CAAATAAGCAGCTATCGCTCTGCAGCTCTGTATCTGCCGTATCCCTGCTGTACCTGCCGG
CACCCCGTCTGTCACCTCTAAGAATGGACAGAGGGTACAACATGCAGAGCACAAGCGGAA
TGCCGATGCATATAAACTGTCAAAAGAGACAAGGTACTCTGCCACTTACTGGCTGTCACG
GTTAGTGGAGGGAGATTTCCTTCCGTTTTCCTAATCGCTAGCCTTTTGCTGCGATGAGCT
AAAAGGCTGTATTAGTACCATCAGGCAGCGCTACAGCTAGATTAGAAGAATCGCAATGAA
ATACGCTCCCTGTT

Homology of Contig TA41390_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31502.1	349	5e-154	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g33902.2	338	0.0
Arabidopsis v10	AT2G33590.1	321	4e-108	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:14224622-14226365 FORWARD LENGTH=321