barSeed - Barley Seed Development Database

Probe CUST_42_PI415269222

Source Contig TA41998_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42_PI415269222	Hv_44K_v2	ATGTTCACGAGGTGCAGCCTCTCTTCTCAAGAAACACTGAAAGAAAATGGTGTTGGTGCA	1208	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41956.2	640	7e-23	298 - 357	98	59 / 60	plus	ABC14145 ABC29753 ABC48320
JLOC1	JLOC1_27246.1	510	4e-23	298 - 357	98	59 / 60	plus
Harvest21	ABC29753	372	3e-25	297 - 356	100	60 / 60	plus	ABC29753
Harvest35	U35_6154	1284	3e-25	1209 - 1268	100	60 / 60	plus

Contig Sequence (1268 bp)

>TA41998_4513 1268 Hv_44K_v2
CTCTCTCTCTCTCTCCCGTCATTACCTCCCAGCACGTATCCTCCTCCTTCCTCCGCAACA
AGGGAGAAACAACGCCGGCGACCACAGGCAGCCATACAAGATTGATTCGCACGCGCGCCG
TGAGGAGCAGGAGCGGCCGATGATGAACGACGGCCGCGTCCACCCGGCGGCCACCAGCTC
CGACTTCTCCGGCGAGTACGCATACTCCTCCTCCGACCCCTCCTCCAGCCCGCTCTACAG
CTTCCACTTCGAGAAGCCCATCCCGCCGCCGCCGCCCCAAAAGCCGCCGCCGCCGCAGCC
CGGCACGTACGTGGTGCAGGTGCCCAAGGACAAGGTCTTCCGCGTGCCGCCGCCGGAGAA
CGCGCGCCTCTTCCAGCACTACACCCGCCGCGCCAAGCGCCGCGCCGGCTGCTCCTGCCT
CCGCGCGTGCCTCTACCTCGCCGTCGCGCTCCTCTCCCTCGCCGTCCTCCTCGCCGCCGC
CGTCGGGGCCGTGTACCTCGCGTTCAAGCCCAGGCAGCCGGCGTACTCGGTCGTGTCCCT
CGCCGTGTCGGGCCTCGCCGGCGTCGGCAACGCCTCGGCCCCCGGCGCGATCTCGCCGGG
GTTCGCCGCGACCGTCCGCGCCGACAACAGAGCCAACGGCAAGGTCGGCGTGCACTACGA
CAGCGCCGGGAGCCGCGTCGCCGTGTCGTACGAGGGCGTGAGCCTGGCGGACGGCGCGTG
GCCGGCCTTCTACCAGGCGCCTGGGAACGTGACGGTGTTCGTGGCGAGGGCCAAGGGCGC
CGGAATACGGTTCTCGGAGCGCGAGCGCGGGCAGATGGCCACGGCGGAGCGGCTCAAGTC
GGTGCTGTTCGACGTGGACATCACGGTTCCCGTGTGGCTGCAGCTTGGCGGGGTGAGGAC
GTGGGCCCTGCCGGTGACGGTGCGGTGCGCCATGGCGGTGGACAGGCTCGCCGCCAGCAC
CAAGGTGGTGTCCAGGTCATGCGACGTGAAGGTGCCGTTCCTGTTCTGGAGGAACTGACG
CCGAAGCAAGAAAAAATGGTTACTTGCTGATTTAGGAGAGCAGTTCTTGCGGGTAGCAGC
AACGGATTTGTGCTGCTTCCGTGATGTTTTTTTCTCCTCTTCAATTTGTAATGTTGGTTT
GATCGAGCAATGTTAATTCTTTTGTCCGTCGAGATCATGTTCTGCCGCAAAATTGTGCCG
CAGTTAAGATGTTCACGAGGTGCAGCCTCTCTTCTCAAGAAACACTGAAAGAAAATGGTG
TTGGTGCA

Homology of Contig TA41998_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59680.1	313	5e-103	protein\|NHL25, putative, expressed
Brachypodium v1_2	Bradi2g53027.1	300	2e-90
Arabidopsis v10	None